miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 3' -52.4 NC_005259.1 + 482 0.7 0.723242
Target:  5'- uGUCAAGUccACCGACGCCacGCUGCu -3'
miRNA:   3'- gCGGUUCGu-UGGCUGUGGcuUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 553 0.68 0.829369
Target:  5'- gGaCCAAGCuGACCcGCACCacggcgugggggucGAGCUACGa -3'
miRNA:   3'- gC-GGUUCG-UUGGcUGUGG--------------CUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 1870 0.67 0.865278
Target:  5'- cCGCCGcguuccguaagcaGGCcGCCGAgauCGCgCGAGCUGCc -3'
miRNA:   3'- -GCGGU-------------UCGuUGGCU---GUG-GCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 2011 0.7 0.74428
Target:  5'- gGCCAucggguGGCGcACCGGCACCucAgUGCGg -3'
miRNA:   3'- gCGGU------UCGU-UGGCUGUGGcuUgAUGC- -5'
23337 3' -52.4 NC_005259.1 + 2042 0.68 0.840904
Target:  5'- nGgUggGCGgucACCGGCACCGAGacacgGCGg -3'
miRNA:   3'- gCgGuuCGU---UGGCUGUGGCUUga---UGC- -5'
23337 3' -52.4 NC_005259.1 + 2166 0.69 0.764866
Target:  5'- gCGUCGAGCcGCCGguuGCCGAggucaugggccGCUACGg -3'
miRNA:   3'- -GCGGUUCGuUGGCug-UGGCU-----------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 2203 0.66 0.896236
Target:  5'- nGgCAAGguGCUGcGCACCGAGCgccCGg -3'
miRNA:   3'- gCgGUUCguUGGC-UGUGGCUUGau-GC- -5'
23337 3' -52.4 NC_005259.1 + 3114 0.67 0.85207
Target:  5'- gGCCAuugcgcggcaccgugGGCAGCggaCGGCACCGcccguggGACUACa -3'
miRNA:   3'- gCGGU---------------UCGUUG---GCUGUGGC-------UUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 4232 0.68 0.801452
Target:  5'- gGCCAAGCAggccccgcccacguGCCucGACugCGAggacaacgggcgGCUGCGc -3'
miRNA:   3'- gCGGUUCGU--------------UGG--CUGugGCU------------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 4389 1.1 0.002498
Target:  5'- uCGCCAAGCAACCGACACCGAACUACGa -3'
miRNA:   3'- -GCGGUUCGUUGGCUGUGGCUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 4796 0.67 0.849527
Target:  5'- gGCCAGGU-ACUG-C-CCGAGCUGCc -3'
miRNA:   3'- gCGGUUCGuUGGCuGuGGCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 4977 0.77 0.338328
Target:  5'- cCGCCGAGUucGGCCGAUgGCCGGgcACUACGg -3'
miRNA:   3'- -GCGGUUCG--UUGGCUG-UGGCU--UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 5074 0.67 0.874001
Target:  5'- gGCCGGGUcgacgGGCCGGuguCACCGGcgauCUGCGu -3'
miRNA:   3'- gCGGUUCG-----UUGGCU---GUGGCUu---GAUGC- -5'
23337 3' -52.4 NC_005259.1 + 5219 0.76 0.398906
Target:  5'- uCGCCGAGCAAuaccCCGACGCUGAGau-CGa -3'
miRNA:   3'- -GCGGUUCGUU----GGCUGUGGCUUgauGC- -5'
23337 3' -52.4 NC_005259.1 + 5493 0.69 0.754636
Target:  5'- gCGCCGAGCGA---GgAUCGAGCUACGc -3'
miRNA:   3'- -GCGGUUCGUUggcUgUGGCUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 5710 0.73 0.538466
Target:  5'- cCGCCAAG--GCCaGCGCCGGACgGCGg -3'
miRNA:   3'- -GCGGUUCguUGGcUGUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 5734 0.66 0.909741
Target:  5'- gGCCAuucucGCGGCCaaGCGgCGAGCUGCc -3'
miRNA:   3'- gCGGUu----CGUUGGc-UGUgGCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 6099 0.77 0.34573
Target:  5'- aCGCCGAGaucGCCGAgGCCGAggccgccGCUACGc -3'
miRNA:   3'- -GCGGUUCgu-UGGCUgUGGCU-------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 6219 0.67 0.88167
Target:  5'- aGCCGccGC-GCCGACACCGuGACcguggGCGa -3'
miRNA:   3'- gCGGUu-CGuUGGCUGUGGC-UUGa----UGC- -5'
23337 3' -52.4 NC_005259.1 + 6505 0.67 0.874001
Target:  5'- gGCCcacauCGACCGACGCCGuGCgcGCGa -3'
miRNA:   3'- gCGGuuc--GUUGGCUGUGGCuUGa-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.