Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23337 | 3' | -52.4 | NC_005259.1 | + | 4389 | 1.1 | 0.002498 |
Target: 5'- uCGCCAAGCAACCGACACCGAACUACGa -3' miRNA: 3'- -GCGGUUCGUUGGCUGUGGCUUGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 45314 | 0.83 | 0.163873 |
Target: 5'- aCGCCGAG--GCCGcCGCCGAACUGCGu -3' miRNA: 3'- -GCGGUUCguUGGCuGUGGCUUGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 4977 | 0.77 | 0.338328 |
Target: 5'- cCGCCGAGUucGGCCGAUgGCCGGgcACUACGg -3' miRNA: 3'- -GCGGUUCG--UUGGCUG-UGGCU--UGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 6099 | 0.77 | 0.34573 |
Target: 5'- aCGCCGAGaucGCCGAgGCCGAggccgccGCUACGc -3' miRNA: 3'- -GCGGUUCgu-UGGCUgUGGCU-------UGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 43033 | 0.77 | 0.34656 |
Target: 5'- cCGCCGAGCAggccGCCGAgCAgCGAACcgACGg -3' miRNA: 3'- -GCGGUUCGU----UGGCU-GUgGCUUGa-UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 5219 | 0.76 | 0.398906 |
Target: 5'- uCGCCGAGCAAuaccCCGACGCUGAGau-CGa -3' miRNA: 3'- -GCGGUUCGUU----GGCUGUGGCUUgauGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 37164 | 0.76 | 0.398906 |
Target: 5'- cCGCCGcGCccGCCGACGCCgcgcgaggacGAGCUGCGg -3' miRNA: 3'- -GCGGUuCGu-UGGCUGUGG----------CUUGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 17081 | 0.75 | 0.417444 |
Target: 5'- gCGUCAGGCcGCCGAUAUUGGGCUGuCGa -3' miRNA: 3'- -GCGGUUCGuUGGCUGUGGCUUGAU-GC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 18477 | 0.75 | 0.446212 |
Target: 5'- aGCCGuGC--CCGACGCCGAcgaGCUACGc -3' miRNA: 3'- gCGGUuCGuuGGCUGUGGCU---UGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 15859 | 0.75 | 0.464992 |
Target: 5'- uCGCCAAGCucGCCGcucucaucgggcACACCGAagagucgACUGCGc -3' miRNA: 3'- -GCGGUUCGu-UGGC------------UGUGGCU-------UGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 9432 | 0.74 | 0.476052 |
Target: 5'- uGUCGAGCAGCCacACGCCGAGC-ACa -3' miRNA: 3'- gCGGUUCGUUGGc-UGUGGCUUGaUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 43906 | 0.74 | 0.486218 |
Target: 5'- gCGCCGgcugaucgaugGGCAGCgaCGACACCGcGCUACu -3' miRNA: 3'- -GCGGU-----------UCGUUG--GCUGUGGCuUGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 18584 | 0.74 | 0.486218 |
Target: 5'- -cCCGAGCAGaCCGACcCCGAuguCUACGa -3' miRNA: 3'- gcGGUUCGUU-GGCUGuGGCUu--GAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 52595 | 0.74 | 0.496486 |
Target: 5'- uCGCCGAGC-ACCaGCGCCGuacgguggccAACUACGu -3' miRNA: 3'- -GCGGUUCGuUGGcUGUGGC----------UUGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 46771 | 0.74 | 0.50062 |
Target: 5'- gCGCCGA-CAGCCGcgcccgccgggccgaACACCGAGcCUGCGa -3' miRNA: 3'- -GCGGUUcGUUGGC---------------UGUGGCUU-GAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 19874 | 0.74 | 0.50685 |
Target: 5'- cCGCCGGGaucGCCGACGCCgcgcccaaGAugUGCGa -3' miRNA: 3'- -GCGGUUCgu-UGGCUGUGG--------CUugAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 47282 | 0.74 | 0.50685 |
Target: 5'- -aCCGAGCAgaccGCCGuCGCCGGACaGCGa -3' miRNA: 3'- gcGGUUCGU----UGGCuGUGGCUUGaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 17771 | 0.73 | 0.527847 |
Target: 5'- gCGCCGGGcCGAgCG-CACCGAGCgUGCGc -3' miRNA: 3'- -GCGGUUC-GUUgGCuGUGGCUUG-AUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 5710 | 0.73 | 0.538466 |
Target: 5'- cCGCCAAG--GCCaGCGCCGGACgGCGg -3' miRNA: 3'- -GCGGUUCguUGGcUGUGGCUUGaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 46908 | 0.73 | 0.538466 |
Target: 5'- cCGCCGAGCAGuCCGcgugcgcCGCCGAGCUuGCc -3' miRNA: 3'- -GCGGUUCGUU-GGCu------GUGGCUUGA-UGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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