miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 3' -52.4 NC_005259.1 + 9432 0.74 0.476052
Target:  5'- uGUCGAGCAGCCacACGCCGAGC-ACa -3'
miRNA:   3'- gCGGUUCGUUGGc-UGUGGCUUGaUGc -5'
23337 3' -52.4 NC_005259.1 + 9534 0.66 0.92216
Target:  5'- cCGCCGGGUcACCGGa---GAGCUGCc -3'
miRNA:   3'- -GCGGUUCGuUGGCUguggCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 46908 0.73 0.538466
Target:  5'- cCGCCGAGCAGuCCGcgugcgcCGCCGAGCUuGCc -3'
miRNA:   3'- -GCGGUUCGUU-GGCu------GUGGCUUGA-UGc -5'
23337 3' -52.4 NC_005259.1 + 5710 0.73 0.538466
Target:  5'- cCGCCAAG--GCCaGCGCCGGACgGCGg -3'
miRNA:   3'- -GCGGUUCguUGGcUGUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 17771 0.73 0.527847
Target:  5'- gCGCCGGGcCGAgCG-CACCGAGCgUGCGc -3'
miRNA:   3'- -GCGGUUC-GUUgGCuGUGGCUUG-AUGC- -5'
23337 3' -52.4 NC_005259.1 + 47282 0.74 0.50685
Target:  5'- -aCCGAGCAgaccGCCGuCGCCGGACaGCGa -3'
miRNA:   3'- gcGGUUCGU----UGGCuGUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 19874 0.74 0.50685
Target:  5'- cCGCCGGGaucGCCGACGCCgcgcccaaGAugUGCGa -3'
miRNA:   3'- -GCGGUUCgu-UGGCUGUGG--------CUugAUGC- -5'
23337 3' -52.4 NC_005259.1 + 46771 0.74 0.50062
Target:  5'- gCGCCGA-CAGCCGcgcccgccgggccgaACACCGAGcCUGCGa -3'
miRNA:   3'- -GCGGUUcGUUGGC---------------UGUGGCUU-GAUGC- -5'
23337 3' -52.4 NC_005259.1 + 52595 0.74 0.496486
Target:  5'- uCGCCGAGC-ACCaGCGCCGuacgguggccAACUACGu -3'
miRNA:   3'- -GCGGUUCGuUGGcUGUGGC----------UUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 18584 0.74 0.486218
Target:  5'- -cCCGAGCAGaCCGACcCCGAuguCUACGa -3'
miRNA:   3'- gcGGUUCGUU-GGCUGuGGCUu--GAUGC- -5'
23337 3' -52.4 NC_005259.1 + 43906 0.74 0.486218
Target:  5'- gCGCCGgcugaucgaugGGCAGCgaCGACACCGcGCUACu -3'
miRNA:   3'- -GCGGU-----------UCGUUG--GCUGUGGCuUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 4389 1.1 0.002498
Target:  5'- uCGCCAAGCAACCGACACCGAACUACGa -3'
miRNA:   3'- -GCGGUUCGUUGGCUGUGGCUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 15859 0.75 0.464992
Target:  5'- uCGCCAAGCucGCCGcucucaucgggcACACCGAagagucgACUGCGc -3'
miRNA:   3'- -GCGGUUCGu-UGGC------------UGUGGCU-------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 18477 0.75 0.446212
Target:  5'- aGCCGuGC--CCGACGCCGAcgaGCUACGc -3'
miRNA:   3'- gCGGUuCGuuGGCUGUGGCU---UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 17081 0.75 0.417444
Target:  5'- gCGUCAGGCcGCCGAUAUUGGGCUGuCGa -3'
miRNA:   3'- -GCGGUUCGuUGGCUGUGGCUUGAU-GC- -5'
23337 3' -52.4 NC_005259.1 + 37164 0.76 0.398906
Target:  5'- cCGCCGcGCccGCCGACGCCgcgcgaggacGAGCUGCGg -3'
miRNA:   3'- -GCGGUuCGu-UGGCUGUGG----------CUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 5219 0.76 0.398906
Target:  5'- uCGCCGAGCAAuaccCCGACGCUGAGau-CGa -3'
miRNA:   3'- -GCGGUUCGUU----GGCUGUGGCUUgauGC- -5'
23337 3' -52.4 NC_005259.1 + 43033 0.77 0.34656
Target:  5'- cCGCCGAGCAggccGCCGAgCAgCGAACcgACGg -3'
miRNA:   3'- -GCGGUUCGU----UGGCU-GUgGCUUGa-UGC- -5'
23337 3' -52.4 NC_005259.1 + 6099 0.77 0.34573
Target:  5'- aCGCCGAGaucGCCGAgGCCGAggccgccGCUACGc -3'
miRNA:   3'- -GCGGUUCgu-UGGCUgUGGCU-------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 4977 0.77 0.338328
Target:  5'- cCGCCGAGUucGGCCGAUgGCCGGgcACUACGg -3'
miRNA:   3'- -GCGGUUCG--UUGGCUG-UGGCU--UGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.