miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 3' -52.4 NC_005259.1 + 66246 0.7 0.701842
Target:  5'- aGCCAucgacgcagcGCGGCCcGCGCCGGGCgGCGg -3'
miRNA:   3'- gCGGUu---------CGUUGGcUGUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 65988 0.71 0.646254
Target:  5'- gCGCCGAGCAGCCGcucgacguggugcGCACCcucgGGGCcGCa -3'
miRNA:   3'- -GCGGUUCGUUGGC-------------UGUGG----CUUGaUGc -5'
23337 3' -52.4 NC_005259.1 + 65426 0.66 0.903123
Target:  5'- gGCCAAGCGAU-GGC-CUGAGCUcGCa -3'
miRNA:   3'- gCGGUUCGUUGgCUGuGGCUUGA-UGc -5'
23337 3' -52.4 NC_005259.1 + 64693 0.68 0.80432
Target:  5'- cCGCCGAGCGauACCcacAUACCGAugcaccacgggcACUGCa -3'
miRNA:   3'- -GCGGUUCGU--UGGc--UGUGGCU------------UGAUGc -5'
23337 3' -52.4 NC_005259.1 + 64590 0.7 0.74428
Target:  5'- gGCCAgcacaccaacgaGGUGACUGACGgCGAGCgcgACGg -3'
miRNA:   3'- gCGGU------------UCGUUGGCUGUgGCUUGa--UGC- -5'
23337 3' -52.4 NC_005259.1 + 63427 0.7 0.691036
Target:  5'- uGCCGAGCAGCCG-C-UCGGGCgagACa -3'
miRNA:   3'- gCGGUUCGUUGGCuGuGGCUUGa--UGc -5'
23337 3' -52.4 NC_005259.1 + 62619 0.66 0.903123
Target:  5'- aCGCCGcaccGUGGCCaGCACCGcAUUGCGu -3'
miRNA:   3'- -GCGGUu---CGUUGGcUGUGGCuUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 61110 0.67 0.88167
Target:  5'- aGCC-AGUAGCCcgaGCCGAGC-ACGg -3'
miRNA:   3'- gCGGuUCGUUGGcugUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 58970 0.71 0.66817
Target:  5'- gGUCGGGCAGCucgucggCGACGgCGAGCUugGc -3'
miRNA:   3'- gCGGUUCGUUG-------GCUGUgGCUUGAugC- -5'
23337 3' -52.4 NC_005259.1 + 57466 0.68 0.840904
Target:  5'- gCGgCAGGCcGgUGGCACCGGAC-ACGu -3'
miRNA:   3'- -GCgGUUCGuUgGCUGUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 56420 0.66 0.896236
Target:  5'- cCGCCGagcucaagcagAGCAGCgaGCGCCGGGCcACGc -3'
miRNA:   3'- -GCGGU-----------UCGUUGgcUGUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 56327 0.68 0.840904
Target:  5'- cCGUCGAGCAAuCCGACuuCCu--CUGCGu -3'
miRNA:   3'- -GCGGUUCGUU-GGCUGu-GGcuuGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 56176 0.66 0.916088
Target:  5'- gGCCAcGguGCCGACAUacgcguugcgCGAGCUGu- -3'
miRNA:   3'- gCGGUuCguUGGCUGUG----------GCUUGAUgc -5'
23337 3' -52.4 NC_005259.1 + 54357 0.67 0.873221
Target:  5'- gGUCGGGCAACgGAuugcgcucgcgauCACCGAugaGCUugGc -3'
miRNA:   3'- gCGGUUCGUUGgCU-------------GUGGCU---UGAugC- -5'
23337 3' -52.4 NC_005259.1 + 53779 0.66 0.909741
Target:  5'- aGCCGuaCGACCGGC-CUGAGCU-CGu -3'
miRNA:   3'- gCGGUucGUUGGCUGuGGCUUGAuGC- -5'
23337 3' -52.4 NC_005259.1 + 52727 0.66 0.92216
Target:  5'- uGUCGAuGUAuGCCGACGCCGGGaucgauCUGCa -3'
miRNA:   3'- gCGGUU-CGU-UGGCUGUGGCUU------GAUGc -5'
23337 3' -52.4 NC_005259.1 + 52595 0.74 0.496486
Target:  5'- uCGCCGAGC-ACCaGCGCCGuacgguggccAACUACGu -3'
miRNA:   3'- -GCGGUUCGuUGGcUGUGGC----------UUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 52270 0.69 0.764866
Target:  5'- gGCCGGGCAgacaggACCGGC-CCGA--UGCGc -3'
miRNA:   3'- gCGGUUCGU------UGGCUGuGGCUugAUGC- -5'
23337 3' -52.4 NC_005259.1 + 52022 0.67 0.874001
Target:  5'- gCGUCAGGCcGCCGcACugCGcGCUGuCGc -3'
miRNA:   3'- -GCGGUUCGuUGGC-UGugGCuUGAU-GC- -5'
23337 3' -52.4 NC_005259.1 + 51979 0.68 0.813761
Target:  5'- cCGCCAGaauCAucACCGACGCCGAuCU-CGa -3'
miRNA:   3'- -GCGGUUc--GU--UGGCUGUGGCUuGAuGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.