miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 3' -52.4 NC_005259.1 + 56176 0.66 0.916088
Target:  5'- gGCCAcGguGCCGACAUacgcguugcgCGAGCUGu- -3'
miRNA:   3'- gCGGUuCguUGGCUGUG----------GCUUGAUgc -5'
23337 3' -52.4 NC_005259.1 + 9534 0.66 0.92216
Target:  5'- cCGCCGGGUcACCGGa---GAGCUGCc -3'
miRNA:   3'- -GCGGUUCGuUGGCUguggCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 52727 0.66 0.92216
Target:  5'- uGUCGAuGUAuGCCGACGCCGGGaucgauCUGCa -3'
miRNA:   3'- gCGGUU-CGU-UGGCUGUGGCUU------GAUGc -5'
23337 3' -52.4 NC_005259.1 + 30345 0.66 0.92216
Target:  5'- aGCaCGAGCucACCgugugGACGCCGAuCUGCc -3'
miRNA:   3'- gCG-GUUCGu-UGG-----CUGUGGCUuGAUGc -5'
23337 3' -52.4 NC_005259.1 + 17023 0.66 0.916088
Target:  5'- cCGCCAuccucGGC-GCUGGCAUCGAcaACcGCGa -3'
miRNA:   3'- -GCGGU-----UCGuUGGCUGUGGCU--UGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 51569 0.66 0.888354
Target:  5'- gGCCAacgauccGGCAGCCGGUGCCGAcacaGCcGCa -3'
miRNA:   3'- gCGGU-------UCGUUGGCUGUGGCU----UGaUGc -5'
23337 3' -52.4 NC_005259.1 + 13941 0.66 0.916088
Target:  5'- cCGCCA---AAUCGACGCCGGACc--- -3'
miRNA:   3'- -GCGGUucgUUGGCUGUGGCUUGaugc -5'
23337 3' -52.4 NC_005259.1 + 52022 0.67 0.874001
Target:  5'- gCGUCAGGCcGCCGcACugCGcGCUGuCGc -3'
miRNA:   3'- -GCGGUUCGuUGGC-UGugGCuUGAU-GC- -5'
23337 3' -52.4 NC_005259.1 + 45950 0.67 0.849527
Target:  5'- -cCCucAGCAcguuGCCGACguuGCCGAGCUugGc -3'
miRNA:   3'- gcGGu-UCGU----UGGCUG---UGGCUUGAugC- -5'
23337 3' -52.4 NC_005259.1 + 21214 0.67 0.866084
Target:  5'- uGCCGAGCucauCCGA-GCCGAG-UACGc -3'
miRNA:   3'- gCGGUUCGuu--GGCUgUGGCUUgAUGC- -5'
23337 3' -52.4 NC_005259.1 + 30426 0.67 0.866084
Target:  5'- aCGUgAGGCAgcgcgaugaGCCGugGCUGuucAGCUACGu -3'
miRNA:   3'- -GCGgUUCGU---------UGGCugUGGC---UUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 4796 0.67 0.849527
Target:  5'- gGCCAGGU-ACUG-C-CCGAGCUGCc -3'
miRNA:   3'- gCGGUUCGuUGGCuGuGGCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 44995 0.67 0.849527
Target:  5'- uGCCgAGGCAccGCCGAcCGCCgGGGCcGCGc -3'
miRNA:   3'- gCGG-UUCGU--UGGCU-GUGG-CUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 27018 0.67 0.88167
Target:  5'- aCGCCGcgccGUAGCUGaACACCuuGAGCUugGc -3'
miRNA:   3'- -GCGGUu---CGUUGGC-UGUGG--CUUGAugC- -5'
23337 3' -52.4 NC_005259.1 + 24352 0.67 0.88167
Target:  5'- cCGCCGGGUGcUCGcACACCGAggucugguggcGCUACc -3'
miRNA:   3'- -GCGGUUCGUuGGC-UGUGGCU-----------UGAUGc -5'
23337 3' -52.4 NC_005259.1 + 6219 0.67 0.88167
Target:  5'- aGCCGccGC-GCCGACACCGuGACcguggGCGa -3'
miRNA:   3'- gCGGUu-CGuUGGCUGUGGC-UUGa----UGC- -5'
23337 3' -52.4 NC_005259.1 + 14331 0.67 0.88167
Target:  5'- cCGCCGcccgcgugcgGGCcGCCGACGCCaucAACUcACGu -3'
miRNA:   3'- -GCGGU----------UCGuUGGCUGUGGc--UUGA-UGC- -5'
23337 3' -52.4 NC_005259.1 + 6505 0.67 0.874001
Target:  5'- gGCCcacauCGACCGACGCCGuGCgcGCGa -3'
miRNA:   3'- gCGGuuc--GUUGGCUGUGGCuUGa-UGC- -5'
23337 3' -52.4 NC_005259.1 + 3114 0.67 0.85207
Target:  5'- gGCCAuugcgcggcaccgugGGCAGCggaCGGCACCGcccguggGACUACa -3'
miRNA:   3'- gCGGU---------------UCGUUG---GCUGUGGC-------UUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 16751 0.67 0.874001
Target:  5'- uCGCCcGGCuGCgugaGACACCGGACcaucACGa -3'
miRNA:   3'- -GCGGuUCGuUGg---CUGUGGCUUGa---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.