Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23337 | 3' | -52.4 | NC_005259.1 | + | 21214 | 0.67 | 0.866084 |
Target: 5'- uGCCGAGCucauCCGA-GCCGAG-UACGc -3' miRNA: 3'- gCGGUUCGuu--GGCUgUGGCUUgAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 1870 | 0.67 | 0.865278 |
Target: 5'- cCGCCGcguuccguaagcaGGCcGCCGAgauCGCgCGAGCUGCc -3' miRNA: 3'- -GCGGU-------------UCGuUGGCU---GUG-GCUUGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 50133 | 0.67 | 0.857094 |
Target: 5'- cCGCCAcacgcgauugguuGGCGAuCCGGCGCgUGAGCgaGCGg -3' miRNA: 3'- -GCGGU-------------UCGUU-GGCUGUG-GCUUGa-UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 3114 | 0.67 | 0.85207 |
Target: 5'- gGCCAuugcgcggcaccgugGGCAGCggaCGGCACCGcccguggGACUACa -3' miRNA: 3'- gCGGU---------------UCGUUG---GCUGUGGC-------UUGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 44995 | 0.67 | 0.849527 |
Target: 5'- uGCCgAGGCAccGCCGAcCGCCgGGGCcGCGc -3' miRNA: 3'- gCGG-UUCGU--UGGCU-GUGG-CUUGaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 4796 | 0.67 | 0.849527 |
Target: 5'- gGCCAGGU-ACUG-C-CCGAGCUGCc -3' miRNA: 3'- gCGGUUCGuUGGCuGuGGCUUGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 45950 | 0.67 | 0.849527 |
Target: 5'- -cCCucAGCAcguuGCCGACguuGCCGAGCUugGc -3' miRNA: 3'- gcGGu-UCGU----UGGCUG---UGGCUUGAugC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 56327 | 0.68 | 0.840904 |
Target: 5'- cCGUCGAGCAAuCCGACuuCCu--CUGCGu -3' miRNA: 3'- -GCGGUUCGUU-GGCUGu-GGcuuGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 57466 | 0.68 | 0.840904 |
Target: 5'- gCGgCAGGCcGgUGGCACCGGAC-ACGu -3' miRNA: 3'- -GCgGUUCGuUgGCUGUGGCUUGaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 13088 | 0.68 | 0.840904 |
Target: 5'- gGCCAuccgguGCcACCGACcCCGGcccgcucggcgGCUACGa -3' miRNA: 3'- gCGGUu-----CGuUGGCUGuGGCU-----------UGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 2042 | 0.68 | 0.840904 |
Target: 5'- nGgUggGCGgucACCGGCACCGAGacacgGCGg -3' miRNA: 3'- gCgGuuCGU---UGGCUGUGGCUUga---UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 43856 | 0.68 | 0.832063 |
Target: 5'- uGCCGAGCGcACCcgugacGACACCG-GCaGCGu -3' miRNA: 3'- gCGGUUCGU-UGG------CUGUGGCuUGaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 22557 | 0.68 | 0.832063 |
Target: 5'- uCGCCGAGgucauggaAGCCGcCACCGAG-UACGu -3' miRNA: 3'- -GCGGUUCg-------UUGGCuGUGGCUUgAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 553 | 0.68 | 0.829369 |
Target: 5'- gGaCCAAGCuGACCcGCACCacggcgugggggucGAGCUACGa -3' miRNA: 3'- gC-GGUUCG-UUGGcUGUGG--------------CUUGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 28964 | 0.68 | 0.823012 |
Target: 5'- uCGCCGAGgucgguGCCGAgGCCGcgagcgcccGCUACGg -3' miRNA: 3'- -GCGGUUCgu----UGGCUgUGGCu--------UGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 23473 | 0.68 | 0.823012 |
Target: 5'- gGCCucGGCAuugucgguGCCGACgccaugaccaagGCCGAGCUcaGCGa -3' miRNA: 3'- gCGGu-UCGU--------UGGCUG------------UGGCUUGA--UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 8057 | 0.68 | 0.813761 |
Target: 5'- cCGCCGGucGCcGCCGACAUCGAGau-CGu -3' miRNA: 3'- -GCGGUU--CGuUGGCUGUGGCUUgauGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 51979 | 0.68 | 0.813761 |
Target: 5'- cCGCCAGaauCAucACCGACGCCGAuCU-CGa -3' miRNA: 3'- -GCGGUUc--GU--UGGCUGUGGCUuGAuGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 39068 | 0.68 | 0.813761 |
Target: 5'- uGCCGAGCuuGCUGGCGUCGAACa--- -3' miRNA: 3'- gCGGUUCGu-UGGCUGUGGCUUGaugc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 37718 | 0.68 | 0.812825 |
Target: 5'- uGCCAgacccgaGGC-ACCGcCGCCGAcgaGCUGCu -3' miRNA: 3'- gCGGU-------UCGuUGGCuGUGGCU---UGAUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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