miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 3' -52.4 NC_005259.1 + 15149 0.66 0.903123
Target:  5'- gGCCAccucGGUGGCCGAgGCCGAGg---- -3'
miRNA:   3'- gCGGU----UCGUUGGCUgUGGCUUgaugc -5'
23337 3' -52.4 NC_005259.1 + 56420 0.66 0.896236
Target:  5'- cCGCCGagcucaagcagAGCAGCgaGCGCCGGGCcACGc -3'
miRNA:   3'- -GCGGU-----------UCGUUGgcUGUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 43737 0.66 0.896236
Target:  5'- gGCCAuGCcGCCGA-GCCGGGCaACa -3'
miRNA:   3'- gCGGUuCGuUGGCUgUGGCUUGaUGc -5'
23337 3' -52.4 NC_005259.1 + 17964 0.66 0.896236
Target:  5'- aCGCCAccGCAcaCGACA-CGGGCUGCGc -3'
miRNA:   3'- -GCGGUu-CGUugGCUGUgGCUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 2203 0.66 0.896236
Target:  5'- nGgCAAGguGCUGcGCACCGAGCgccCGg -3'
miRNA:   3'- gCgGUUCguUGGC-UGUGGCUUGau-GC- -5'
23337 3' -52.4 NC_005259.1 + 28931 0.66 0.889083
Target:  5'- aGCCAgaAGCAGgCGGCAC-GAucCUGCGc -3'
miRNA:   3'- gCGGU--UCGUUgGCUGUGgCUu-GAUGC- -5'
23337 3' -52.4 NC_005259.1 + 51569 0.66 0.888354
Target:  5'- gGCCAacgauccGGCAGCCGGUGCCGAcacaGCcGCa -3'
miRNA:   3'- gCGGU-------UCGUUGGCUGUGGCU----UGaUGc -5'
23337 3' -52.4 NC_005259.1 + 61110 0.67 0.88167
Target:  5'- aGCC-AGUAGCCcgaGCCGAGC-ACGg -3'
miRNA:   3'- gCGGuUCGUUGGcugUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 8314 0.67 0.88167
Target:  5'- cCGCCuugucgGAGCuGCCGACGgCGAucagccggucacGCUGCu -3'
miRNA:   3'- -GCGG------UUCGuUGGCUGUgGCU------------UGAUGc -5'
23337 3' -52.4 NC_005259.1 + 24352 0.67 0.88167
Target:  5'- cCGCCGGGUGcUCGcACACCGAggucugguggcGCUACc -3'
miRNA:   3'- -GCGGUUCGUuGGC-UGUGGCU-----------UGAUGc -5'
23337 3' -52.4 NC_005259.1 + 14331 0.67 0.88167
Target:  5'- cCGCCGcccgcgugcgGGCcGCCGACGCCaucAACUcACGu -3'
miRNA:   3'- -GCGGU----------UCGuUGGCUGUGGc--UUGA-UGC- -5'
23337 3' -52.4 NC_005259.1 + 27018 0.67 0.88167
Target:  5'- aCGCCGcgccGUAGCUGaACACCuuGAGCUugGc -3'
miRNA:   3'- -GCGGUu---CGUUGGC-UGUGG--CUUGAugC- -5'
23337 3' -52.4 NC_005259.1 + 6219 0.67 0.88167
Target:  5'- aGCCGccGC-GCCGACACCGuGACcguggGCGa -3'
miRNA:   3'- gCGGUu-CGuUGGCUGUGGC-UUGa----UGC- -5'
23337 3' -52.4 NC_005259.1 + 5074 0.67 0.874001
Target:  5'- gGCCGGGUcgacgGGCCGGuguCACCGGcgauCUGCGu -3'
miRNA:   3'- gCGGUUCG-----UUGGCU---GUGGCUu---GAUGC- -5'
23337 3' -52.4 NC_005259.1 + 16430 0.67 0.874001
Target:  5'- cCGUCGAGCGGCCcaaACCGGGCa--- -3'
miRNA:   3'- -GCGGUUCGUUGGcugUGGCUUGaugc -5'
23337 3' -52.4 NC_005259.1 + 16751 0.67 0.874001
Target:  5'- uCGCCcGGCuGCgugaGACACCGGACcaucACGa -3'
miRNA:   3'- -GCGGuUCGuUGg---CUGUGGCUUGa---UGC- -5'
23337 3' -52.4 NC_005259.1 + 6505 0.67 0.874001
Target:  5'- gGCCcacauCGACCGACGCCGuGCgcGCGa -3'
miRNA:   3'- gCGGuuc--GUUGGCUGUGGCuUGa-UGC- -5'
23337 3' -52.4 NC_005259.1 + 52022 0.67 0.874001
Target:  5'- gCGUCAGGCcGCCGcACugCGcGCUGuCGc -3'
miRNA:   3'- -GCGGUUCGuUGGC-UGugGCuUGAU-GC- -5'
23337 3' -52.4 NC_005259.1 + 54357 0.67 0.873221
Target:  5'- gGUCGGGCAACgGAuugcgcucgcgauCACCGAugaGCUugGc -3'
miRNA:   3'- gCGGUUCGUUGgCU-------------GUGGCU---UGAugC- -5'
23337 3' -52.4 NC_005259.1 + 21214 0.67 0.866084
Target:  5'- uGCCGAGCucauCCGA-GCCGAG-UACGc -3'
miRNA:   3'- gCGGUUCGuu--GGCUgUGGCUUgAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.