miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23339 5' -61.3 NC_005259.1 + 50694 0.66 0.49809
Target:  5'- aGGcgcugCUCGUCGUCGCgCUUgaGCCGGg -3'
miRNA:   3'- aCCaaa--GGGCAGCGGCG-GAG--CGGCCa -5'
23339 5' -61.3 NC_005259.1 + 15742 0.66 0.49809
Target:  5'- ---aUUUCC-UCGCCGCCUacgagGCCGGg -3'
miRNA:   3'- accaAAGGGcAGCGGCGGAg----CGGCCa -5'
23339 5' -61.3 NC_005259.1 + 7309 0.66 0.488372
Target:  5'- uUGGgugCCCGaguUCaCCGCCgUCGCCGaGUa -3'
miRNA:   3'- -ACCaaaGGGC---AGcGGCGG-AGCGGC-CA- -5'
23339 5' -61.3 NC_005259.1 + 31866 0.66 0.488372
Target:  5'- uUGGcgaUCuuGUCgGUCGugaCCUCGCCGGUc -3'
miRNA:   3'- -ACCaa-AGggCAG-CGGC---GGAGCGGCCA- -5'
23339 5' -61.3 NC_005259.1 + 31680 0.66 0.46921
Target:  5'- gGGUUgCCCGagGCauCCUCGgCGGUg -3'
miRNA:   3'- aCCAAaGGGCagCGgcGGAGCgGCCA- -5'
23339 5' -61.3 NC_005259.1 + 50203 0.66 0.46921
Target:  5'- ----cUCCCGcucaagCGCCGCCUCGUCa-- -3'
miRNA:   3'- accaaAGGGCa-----GCGGCGGAGCGGcca -5'
23339 5' -61.3 NC_005259.1 + 45334 0.66 0.459774
Target:  5'- cUGcGUggCCUG-CGCCGCCUgggcCGCCGcGUa -3'
miRNA:   3'- -AC-CAaaGGGCaGCGGCGGA----GCGGC-CA- -5'
23339 5' -61.3 NC_005259.1 + 48177 0.66 0.459774
Target:  5'- -----cCCCGcCGCCGCCgggUGUCGGa -3'
miRNA:   3'- accaaaGGGCaGCGGCGGa--GCGGCCa -5'
23339 5' -61.3 NC_005259.1 + 20158 0.66 0.458836
Target:  5'- cGGUgcCCUGgccaccgcgccCGCCGCCucggcugacgagaUCGCCGGUu -3'
miRNA:   3'- aCCAaaGGGCa----------GCGGCGG-------------AGCGGCCA- -5'
23339 5' -61.3 NC_005259.1 + 42211 0.66 0.45044
Target:  5'- aUGGaugCCCGccgCGCCGCCgUCcCCGGc -3'
miRNA:   3'- -ACCaaaGGGCa--GCGGCGG-AGcGGCCa -5'
23339 5' -61.3 NC_005259.1 + 31732 0.66 0.45044
Target:  5'- aGGUga-CCG-CGCCuGCCgcgagCGCUGGUg -3'
miRNA:   3'- aCCAaagGGCaGCGG-CGGa----GCGGCCA- -5'
23339 5' -61.3 NC_005259.1 + 56221 0.67 0.441211
Target:  5'- cGGUguaugCCaguCGUCGCCGCCgaccaCGuuGGg -3'
miRNA:   3'- aCCAaa---GG---GCAGCGGCGGa----GCggCCa -5'
23339 5' -61.3 NC_005259.1 + 33206 0.67 0.43209
Target:  5'- aUGGaucagcacgUUCuuGUUGCCGCC--GCCGGUc -3'
miRNA:   3'- -ACCa--------AAGggCAGCGGCGGagCGGCCA- -5'
23339 5' -61.3 NC_005259.1 + 25909 0.67 0.42308
Target:  5'- aUGGccgCCUGa-GCCGCCgcCGCCGGUc -3'
miRNA:   3'- -ACCaaaGGGCagCGGCGGa-GCGGCCA- -5'
23339 5' -61.3 NC_005259.1 + 58860 0.67 0.405404
Target:  5'- cGGgcUCgCCGUCGUCGUCgUCGCCu-- -3'
miRNA:   3'- aCCaaAG-GGCAGCGGCGG-AGCGGcca -5'
23339 5' -61.3 NC_005259.1 + 36666 0.68 0.37978
Target:  5'- -----gCCC-UCGCCGCCgcCGCCGGg -3'
miRNA:   3'- accaaaGGGcAGCGGCGGa-GCGGCCa -5'
23339 5' -61.3 NC_005259.1 + 36874 0.68 0.37978
Target:  5'- cUGGcaccgCCCG-CGCCGaCgaCGCCGGUg -3'
miRNA:   3'- -ACCaaa--GGGCaGCGGC-GgaGCGGCCA- -5'
23339 5' -61.3 NC_005259.1 + 45494 0.69 0.331882
Target:  5'- cUGGUggCCUugGUCGCUgugGCCaccgCGCCGGUg -3'
miRNA:   3'- -ACCAaaGGG--CAGCGG---CGGa---GCGGCCA- -5'
23339 5' -61.3 NC_005259.1 + 53715 0.69 0.324344
Target:  5'- gUGGUca-CCG-CGCCGCUgauggugaugUCGCCGGg -3'
miRNA:   3'- -ACCAaagGGCaGCGGCGG----------AGCGGCCa -5'
23339 5' -61.3 NC_005259.1 + 64191 0.69 0.309652
Target:  5'- cGGgaucUUCCuCGaUGUCGaCCUCGCCGGUc -3'
miRNA:   3'- aCCa---AAGG-GCaGCGGC-GGAGCGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.