miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23340 3' -57 NC_005259.1 + 149 0.7 0.454069
Target:  5'- aCCuacUGGgCUCGCCCGGCGGGgucCGgCa -3'
miRNA:   3'- aGGu--ACUgGAGUGGGCCGUCUa--GCgG- -5'
23340 3' -57 NC_005259.1 + 3030 1.12 0.000541
Target:  5'- cUCCAUGACCUCACCCGGCAGAUCGCCg -3'
miRNA:   3'- -AGGUACUGGAGUGGGCCGUCUAGCGG- -5'
23340 3' -57 NC_005259.1 + 7604 0.67 0.660789
Target:  5'- gUCgGUGAcacCCUCACCCacgagGGCcGGAccuacaccgUCGCCg -3'
miRNA:   3'- -AGgUACU---GGAGUGGG-----CCG-UCU---------AGCGG- -5'
23340 3' -57 NC_005259.1 + 13171 0.78 0.155426
Target:  5'- cCCGaGACC--GCCCGGCAGcUCGCCa -3'
miRNA:   3'- aGGUaCUGGagUGGGCCGUCuAGCGG- -5'
23340 3' -57 NC_005259.1 + 13382 0.69 0.52361
Target:  5'- cCCAUGuucACCgacccacgcauUCGCUCGGCcuuccuggccgGGGUCGCCg -3'
miRNA:   3'- aGGUAC---UGG-----------AGUGGGCCG-----------UCUAGCGG- -5'
23340 3' -57 NC_005259.1 + 14162 0.7 0.473452
Target:  5'- gUCGUgugGAUCUCGCCgGGCGGGUgGCa -3'
miRNA:   3'- aGGUA---CUGGAGUGGgCCGUCUAgCGg -5'
23340 3' -57 NC_005259.1 + 16453 0.69 0.493242
Target:  5'- aCCGUcGGCaucggUACCCcgccGCAGAUCGCCg -3'
miRNA:   3'- aGGUA-CUGga---GUGGGc---CGUCUAGCGG- -5'
23340 3' -57 NC_005259.1 + 16564 0.79 0.132327
Target:  5'- aUCCc--GCC-CACCgGGCAGAUCGCCg -3'
miRNA:   3'- -AGGuacUGGaGUGGgCCGUCUAGCGG- -5'
23340 3' -57 NC_005259.1 + 16828 0.68 0.554666
Target:  5'- gUCAUGAUCcgaCACaaGGCGGGUgGCCa -3'
miRNA:   3'- aGGUACUGGa--GUGggCCGUCUAgCGG- -5'
23340 3' -57 NC_005259.1 + 18967 0.68 0.596849
Target:  5'- --gGUGACCUCgccgcguacaucGCCCGGCAcgaGAUCGg- -3'
miRNA:   3'- aggUACUGGAG------------UGGGCCGU---CUAGCgg -5'
23340 3' -57 NC_005259.1 + 19438 0.66 0.692544
Target:  5'- ----cGACCUCGCCCcgaGGCugucaucgAGAcCGCCg -3'
miRNA:   3'- agguaCUGGAGUGGG---CCG--------UCUaGCGG- -5'
23340 3' -57 NC_005259.1 + 19860 0.66 0.682
Target:  5'- --uGUGGCgCUCGCgCCcGCcgGGAUCGCCg -3'
miRNA:   3'- aggUACUG-GAGUG-GGcCG--UCUAGCGG- -5'
23340 3' -57 NC_005259.1 + 20162 0.67 0.61814
Target:  5'- gCCcUGGCCaccgCGCCCgccgccucGGCugacgAGAUCGCCg -3'
miRNA:   3'- aGGuACUGGa---GUGGG--------CCG-----UCUAGCGG- -5'
23340 3' -57 NC_005259.1 + 20479 0.74 0.287412
Target:  5'- gCCGUcGACCUCgacaccGCCCGGCAGcucAUCGgCg -3'
miRNA:   3'- aGGUA-CUGGAG------UGGGCCGUC---UAGCgG- -5'
23340 3' -57 NC_005259.1 + 22541 0.66 0.682
Target:  5'- uUCCAgcaguccGACCUCGCCgaGGUcauGGAagcCGCCa -3'
miRNA:   3'- -AGGUa------CUGGAGUGGg-CCG---UCUa--GCGG- -5'
23340 3' -57 NC_005259.1 + 23967 0.66 0.670351
Target:  5'- gCCGauUGACCUCguACCCGcGCGccaccacGGUgGCCa -3'
miRNA:   3'- aGGU--ACUGGAG--UGGGC-CGU-------CUAgCGG- -5'
23340 3' -57 NC_005259.1 + 26547 0.67 0.639477
Target:  5'- aCCAcGAUCUCACCgaGGCuGuagcCGCCg -3'
miRNA:   3'- aGGUaCUGGAGUGGg-CCGuCua--GCGG- -5'
23340 3' -57 NC_005259.1 + 26636 0.7 0.473452
Target:  5'- aUCgAUGGCCUggcgugCGCUCGGCAGGuUCGgCg -3'
miRNA:   3'- -AGgUACUGGA------GUGGGCCGUCU-AGCgG- -5'
23340 3' -57 NC_005259.1 + 27890 0.67 0.639477
Target:  5'- aCCAcGAUC-CACCUGG--GGUCGCCg -3'
miRNA:   3'- aGGUaCUGGaGUGGGCCguCUAGCGG- -5'
23340 3' -57 NC_005259.1 + 29457 0.74 0.272999
Target:  5'- -gCGUGACCUugcCGCCCGGCucggcauGGAcCGCCg -3'
miRNA:   3'- agGUACUGGA---GUGGGCCG-------UCUaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.