miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23340 3' -57 NC_005259.1 + 45927 0.66 0.703032
Target:  5'- aCCGaGGCUcUGCCCGuGCAGAUC-CCu -3'
miRNA:   3'- aGGUaCUGGaGUGGGC-CGUCUAGcGG- -5'
23340 3' -57 NC_005259.1 + 48831 0.7 0.463708
Target:  5'- aCCAUcACCcgCAcCCCGGaagAGAUCGCCc -3'
miRNA:   3'- aGGUAcUGGa-GU-GGGCCg--UCUAGCGG- -5'
23340 3' -57 NC_005259.1 + 57690 0.7 0.463708
Target:  5'- aCCGUGGCCagguugccgggcUUGCCCGacucGCGGGUCuGCCa -3'
miRNA:   3'- aGGUACUGG------------AGUGGGC----CGUCUAG-CGG- -5'
23340 3' -57 NC_005259.1 + 26636 0.7 0.473452
Target:  5'- aUCgAUGGCCUggcgugCGCUCGGCAGGuUCGgCg -3'
miRNA:   3'- -AGgUACUGGA------GUGGGCCGUCU-AGCgG- -5'
23340 3' -57 NC_005259.1 + 14162 0.7 0.473452
Target:  5'- gUCGUgugGAUCUCGCCgGGCGGGUgGCa -3'
miRNA:   3'- aGGUA---CUGGAGUGGgCCGUCUAgCGg -5'
23340 3' -57 NC_005259.1 + 16453 0.69 0.493242
Target:  5'- aCCGUcGGCaucggUACCCcgccGCAGAUCGCCg -3'
miRNA:   3'- aGGUA-CUGga---GUGGGc---CGUCUAGCGG- -5'
23340 3' -57 NC_005259.1 + 51830 0.69 0.493242
Target:  5'- -gCA-GACC-CGCCCGGUuGAUCgGCCa -3'
miRNA:   3'- agGUaCUGGaGUGGGCCGuCUAG-CGG- -5'
23340 3' -57 NC_005259.1 + 45619 0.69 0.513403
Target:  5'- cUCgAUGcccGCCggGCCgGGCAGcgCGCCg -3'
miRNA:   3'- -AGgUAC---UGGagUGGgCCGUCuaGCGG- -5'
23340 3' -57 NC_005259.1 + 65166 0.69 0.52361
Target:  5'- gCCAUGGCC-CGCCgGGUcaAGG-CGCUg -3'
miRNA:   3'- aGGUACUGGaGUGGgCCG--UCUaGCGG- -5'
23340 3' -57 NC_005259.1 + 149 0.7 0.454069
Target:  5'- aCCuacUGGgCUCGCCCGGCGGGgucCGgCa -3'
miRNA:   3'- aGGu--ACUgGAGUGGGCCGUCUa--GCgG- -5'
23340 3' -57 NC_005259.1 + 57956 0.7 0.435125
Target:  5'- gCCAUGGCC-C-CCaUGGUcgAGGUCGCCg -3'
miRNA:   3'- aGGUACUGGaGuGG-GCCG--UCUAGCGG- -5'
23340 3' -57 NC_005259.1 + 43867 0.74 0.287412
Target:  5'- cCCGUGACgaCA-CCGGCAGcGUUGCCg -3'
miRNA:   3'- aGGUACUGgaGUgGGCCGUC-UAGCGG- -5'
23340 3' -57 NC_005259.1 + 16564 0.79 0.132327
Target:  5'- aUCCc--GCC-CACCgGGCAGAUCGCCg -3'
miRNA:   3'- -AGGuacUGGaGUGGgCCGUCUAGCGG- -5'
23340 3' -57 NC_005259.1 + 13171 0.78 0.155426
Target:  5'- cCCGaGACC--GCCCGGCAGcUCGCCa -3'
miRNA:   3'- aGGUaCUGGagUGGGCCGUCuAGCGG- -5'
23340 3' -57 NC_005259.1 + 31881 0.77 0.172795
Target:  5'- gUCGUGACCUCgccggucucaagGCCCGGCGcGAgCGCCu -3'
miRNA:   3'- aGGUACUGGAG------------UGGGCCGU-CUaGCGG- -5'
23340 3' -57 NC_005259.1 + 52140 0.75 0.235612
Target:  5'- gUCCGgcACCUCGCCgaGGCAGGcagCGCCg -3'
miRNA:   3'- -AGGUacUGGAGUGGg-CCGUCUa--GCGG- -5'
23340 3' -57 NC_005259.1 + 42495 0.75 0.241633
Target:  5'- gCCGUGACC-CGUCCGGCGGuGUgGCCa -3'
miRNA:   3'- aGGUACUGGaGUGGGCCGUC-UAgCGG- -5'
23340 3' -57 NC_005259.1 + 44710 0.74 0.267002
Target:  5'- cCCAcccGAUCUgcaacgCACCCGGCAGcgCGCCc -3'
miRNA:   3'- aGGUa--CUGGA------GUGGGCCGUCuaGCGG- -5'
23340 3' -57 NC_005259.1 + 29457 0.74 0.272999
Target:  5'- -gCGUGACCUugcCGCCCGGCucggcauGGAcCGCCg -3'
miRNA:   3'- agGUACUGGA---GUGGGCCG-------UCUaGCGG- -5'
23340 3' -57 NC_005259.1 + 20479 0.74 0.287412
Target:  5'- gCCGUcGACCUCgacaccGCCCGGCAGcucAUCGgCg -3'
miRNA:   3'- aGGUA-CUGGAG------UGGGCCGUC---UAGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.