miRNA display CGI


Results 41 - 60 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23342 3' -55 NC_005259.1 + 31039 0.67 0.716643
Target:  5'- ---aUCACCUCGCCGaacgCGuCGACCACa -3'
miRNA:   3'- gaucAGUGGGGCGGUg---GUuGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 39899 0.67 0.72721
Target:  5'- --uGUCGCCgCCGCCcGCCucgauccgucGAgGGCCGCg -3'
miRNA:   3'- gauCAGUGG-GGCGG-UGG----------UUgUUGGUG- -5'
23342 3' -55 NC_005259.1 + 20767 0.67 0.72721
Target:  5'- --cGUC-CCCCGcCCACCGGguGgCGCg -3'
miRNA:   3'- gauCAGuGGGGC-GGUGGUUguUgGUG- -5'
23342 3' -55 NC_005259.1 + 20304 0.68 0.662796
Target:  5'- uCUGGUCGCCgaGCUACUAcaaaccguucACGugCACg -3'
miRNA:   3'- -GAUCAGUGGggCGGUGGU----------UGUugGUG- -5'
23342 3' -55 NC_005259.1 + 28568 0.68 0.640986
Target:  5'- ---aUCAcCCCCGCCACCGccucugacGCcGCCAUc -3'
miRNA:   3'- gaucAGU-GGGGCGGUGGU--------UGuUGGUG- -5'
23342 3' -55 NC_005259.1 + 6607 0.68 0.6519
Target:  5'- -cGGaUCACCCCGUCgaucaagauuGCCAGCGgguCCGCc -3'
miRNA:   3'- gaUC-AGUGGGGCGG----------UGGUUGUu--GGUG- -5'
23342 3' -55 NC_005259.1 + 19879 0.68 0.6519
Target:  5'- -gGGaUCGCCgaCGCCGCgcccaagaugugCGACAACCACg -3'
miRNA:   3'- gaUC-AGUGGg-GCGGUG------------GUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 42231 0.68 0.6519
Target:  5'- --cGUC-CCCgGCCAUCu-CGACCACc -3'
miRNA:   3'- gauCAGuGGGgCGGUGGuuGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 45398 0.68 0.6519
Target:  5'- -gGGUCGCCgCCGagcgCGCUGAUGGCCGCc -3'
miRNA:   3'- gaUCAGUGG-GGCg---GUGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 26058 0.68 0.6519
Target:  5'- uUGGcCAUgCCGCCGCCgAGCAgucccccgagGCCGCc -3'
miRNA:   3'- gAUCaGUGgGGCGGUGG-UUGU----------UGGUG- -5'
23342 3' -55 NC_005259.1 + 7578 0.68 0.640986
Target:  5'- ---uUCGCgCCGCCGCCGcCGACCuCa -3'
miRNA:   3'- gaucAGUGgGGCGGUGGUuGUUGGuG- -5'
23342 3' -55 NC_005259.1 + 21820 0.68 0.640986
Target:  5'- -cGGUCACCacaCCaaCACCAGCAACaCACc -3'
miRNA:   3'- gaUCAGUGG---GGcgGUGGUUGUUG-GUG- -5'
23342 3' -55 NC_005259.1 + 46369 0.68 0.630064
Target:  5'- aUGGcacCGCCCgGCC-CCAucucacGCAGCCGCg -3'
miRNA:   3'- gAUCa--GUGGGgCGGuGGU------UGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 66740 0.68 0.630064
Target:  5'- -cGGUCaggcugaugcuGCCCgGCCuGCCAGuCGACCGCc -3'
miRNA:   3'- gaUCAG-----------UGGGgCGG-UGGUU-GUUGGUG- -5'
23342 3' -55 NC_005259.1 + 60267 0.68 0.630064
Target:  5'- gCUGGcCACCagCGCUGCCgGGCGGCCAUc -3'
miRNA:   3'- -GAUCaGUGGg-GCGGUGG-UUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 57732 0.68 0.630064
Target:  5'- -cAGUCACCCaCGUaCugCAACGcgauguugcgaGCCGCg -3'
miRNA:   3'- gaUCAGUGGG-GCG-GugGUUGU-----------UGGUG- -5'
23342 3' -55 NC_005259.1 + 12894 0.68 0.630064
Target:  5'- -cGGUCACCuaCCGUCggaucaugACCAACAACCu- -3'
miRNA:   3'- gaUCAGUGG--GGCGG--------UGGUUGUUGGug -5'
23342 3' -55 NC_005259.1 + 45770 0.68 0.673664
Target:  5'- ----aCGCCCuCGCCggguGCCAGC-ACCGCg -3'
miRNA:   3'- gaucaGUGGG-GCGG----UGGUUGuUGGUG- -5'
23342 3' -55 NC_005259.1 + 7285 0.68 0.684494
Target:  5'- ----cCGCCCCGCCcCCAAgcACUACa -3'
miRNA:   3'- gaucaGUGGGGCGGuGGUUguUGGUG- -5'
23342 3' -55 NC_005259.1 + 23780 0.68 0.688812
Target:  5'- -----aGCCCCGCagacgcacgaaacCCAACAACCACg -3'
miRNA:   3'- gaucagUGGGGCGgu-----------GGUUGUUGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.