miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23342 3' -55 NC_005259.1 + 37044 0.66 0.76843
Target:  5'- uUGGUg--CCCGCCACCGcccACGGCgGCg -3'
miRNA:   3'- gAUCAgugGGGCGGUGGU---UGUUGgUG- -5'
23342 3' -55 NC_005259.1 + 40868 0.66 0.778417
Target:  5'- aUGGcCGCCCacaGCuCACCGGCcACCGu -3'
miRNA:   3'- gAUCaGUGGGg--CG-GUGGUUGuUGGUg -5'
23342 3' -55 NC_005259.1 + 53228 0.66 0.787278
Target:  5'- ----gCGCCCugcuugagguucgCGCCGCCGACAccgucGCCGCc -3'
miRNA:   3'- gaucaGUGGG-------------GCGGUGGUUGU-----UGGUG- -5'
23342 3' -55 NC_005259.1 + 38948 0.66 0.778417
Target:  5'- -cGGU-GCCgCUGCCGCCGAgAGCCuGCa -3'
miRNA:   3'- gaUCAgUGG-GGCGGUGGUUgUUGG-UG- -5'
23342 3' -55 NC_005259.1 + 18401 0.66 0.76843
Target:  5'- -gAG-CACCUCGCCgaGCCcGCGcccGCCACc -3'
miRNA:   3'- gaUCaGUGGGGCGG--UGGuUGU---UGGUG- -5'
23342 3' -55 NC_005259.1 + 1914 0.66 0.787278
Target:  5'- -gAGgaagCGCgCCGCCccaaaauGCCGACGGuCCACa -3'
miRNA:   3'- gaUCa---GUGgGGCGG-------UGGUUGUU-GGUG- -5'
23342 3' -55 NC_005259.1 + 14315 0.66 0.788255
Target:  5'- aUGGcCGCCCucgaCGCCGCCGcccGCGugcggGCCGCc -3'
miRNA:   3'- gAUCaGUGGG----GCGGUGGU---UGU-----UGGUG- -5'
23342 3' -55 NC_005259.1 + 55274 0.66 0.777425
Target:  5'- gCUAGUCACCUgucccucaaUugagggacguuugGCCGCgugCGACGACCACa -3'
miRNA:   3'- -GAUCAGUGGG---------G-------------CGGUG---GUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 41688 0.66 0.788255
Target:  5'- gUGGcCACCgCGCaCACaggcauGCAGCCGCc -3'
miRNA:   3'- gAUCaGUGGgGCG-GUGgu----UGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 16634 0.67 0.715582
Target:  5'- -aGGcCACCUacggcgaCGCCGCCGACAauuucggggugACCGCc -3'
miRNA:   3'- gaUCaGUGGG-------GCGGUGGUUGU-----------UGGUG- -5'
23342 3' -55 NC_005259.1 + 22604 0.67 0.716643
Target:  5'- -aAG-CugCaCGCCGCCGACcGCCGCc -3'
miRNA:   3'- gaUCaGugGgGCGGUGGUUGuUGGUG- -5'
23342 3' -55 NC_005259.1 + 8057 0.67 0.716643
Target:  5'- ----cCGCCggUCGCCGCCGACAucgagaucguGCCGCg -3'
miRNA:   3'- gaucaGUGG--GGCGGUGGUUGU----------UGGUG- -5'
23342 3' -55 NC_005259.1 + 318 0.67 0.705994
Target:  5'- -gGGUgCGUCCgGCCAacgcacaccuCCGACAACCACg -3'
miRNA:   3'- gaUCA-GUGGGgCGGU----------GGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 34489 0.67 0.705994
Target:  5'- --uGUC-CCCCGCCgACgCGACGACgAUg -3'
miRNA:   3'- gauCAGuGGGGCGG-UG-GUUGUUGgUG- -5'
23342 3' -55 NC_005259.1 + 18966 0.67 0.705994
Target:  5'- -gGGUgACCUCGCCGCguACAucGCCcgGCa -3'
miRNA:   3'- gaUCAgUGGGGCGGUGguUGU--UGG--UG- -5'
23342 3' -55 NC_005259.1 + 36143 0.67 0.737683
Target:  5'- -gGG-CugUCCGUCGCCAugG-CCACg -3'
miRNA:   3'- gaUCaGugGGGCGGUGGUugUuGGUG- -5'
23342 3' -55 NC_005259.1 + 39899 0.67 0.72721
Target:  5'- --uGUCGCCgCCGCCcGCCucgauccgucGAgGGCCGCg -3'
miRNA:   3'- gauCAGUGG-GGCGG-UGG----------UUgUUGGUG- -5'
23342 3' -55 NC_005259.1 + 31039 0.67 0.716643
Target:  5'- ---aUCACCUCGCCGaacgCGuCGACCACa -3'
miRNA:   3'- gaucAGUGGGGCGGUg---GUuGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 4032 0.67 0.694198
Target:  5'- -cGGUCAagguucacagaauCCCCGCCACCc-CAACaCAUu -3'
miRNA:   3'- gaUCAGU-------------GGGGCGGUGGuuGUUG-GUG- -5'
23342 3' -55 NC_005259.1 + 45333 0.67 0.737683
Target:  5'- aCUGcGUgGCCUgCGCCGCCuggGCcGCCGCg -3'
miRNA:   3'- -GAU-CAgUGGG-GCGGUGGu--UGuUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.