miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23342 3' -55 NC_005259.1 + 25118 0.72 0.451345
Target:  5'- -aGGUCgACCCCGCCGaccuccCCGACGugACCAa -3'
miRNA:   3'- gaUCAG-UGGGGCGGU------GGUUGU--UGGUg -5'
23342 3' -55 NC_005259.1 + 31755 0.71 0.461181
Target:  5'- gCUGGUguccccacCGCCCCGUCAUCGAUgugcugcgccuuGACCGCg -3'
miRNA:   3'- -GAUCA--------GUGGGGCGGUGGUUG------------UUGGUG- -5'
23342 3' -55 NC_005259.1 + 37656 0.71 0.461181
Target:  5'- ----cCGCCgCCGCCGCCGguGCcGCCACg -3'
miRNA:   3'- gaucaGUGG-GGCGGUGGU--UGuUGGUG- -5'
23342 3' -55 NC_005259.1 + 56732 0.71 0.47113
Target:  5'- --cGUCGacguaUCCGCCACCGAUGACcCACg -3'
miRNA:   3'- gauCAGUg----GGGCGGUGGUUGUUG-GUG- -5'
23342 3' -55 NC_005259.1 + 63410 0.71 0.481186
Target:  5'- aUGGUUGCCCuUGCUcauGCCgAGCAGCCGCu -3'
miRNA:   3'- gAUCAGUGGG-GCGG---UGG-UUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 13343 0.71 0.481186
Target:  5'- -cGGgacCGCCCCGCCGCac-CGAUCACa -3'
miRNA:   3'- gaUCa--GUGGGGCGGUGguuGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 53715 0.71 0.481186
Target:  5'- gUGGUCACCgCGCCGCUGAUggUgAUg -3'
miRNA:   3'- gAUCAGUGGgGCGGUGGUUGuuGgUG- -5'
23342 3' -55 NC_005259.1 + 35858 0.71 0.501603
Target:  5'- -aGGUcCGCCgCCGCguCCAccGCAGCCGCc -3'
miRNA:   3'- gaUCA-GUGG-GGCGguGGU--UGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 25715 0.7 0.510914
Target:  5'- -----gGCCUCGCUguuggguACCAACAACCACg -3'
miRNA:   3'- gaucagUGGGGCGG-------UGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 22830 0.7 0.522391
Target:  5'- aCUGcGUCgugcugGCCCgGcCCACCcGCAGCCGCa -3'
miRNA:   3'- -GAU-CAG------UGGGgC-GGUGGuUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 4173 0.7 0.53291
Target:  5'- aUGGUCACgCUGCUGCgCGAgacCAACCGCa -3'
miRNA:   3'- gAUCAGUGgGGCGGUG-GUU---GUUGGUG- -5'
23342 3' -55 NC_005259.1 + 1362 0.7 0.53291
Target:  5'- aCUGGgccgcUCGCCgCGCCGCCcGCGAggcCCGCg -3'
miRNA:   3'- -GAUC-----AGUGGgGCGGUGGuUGUU---GGUG- -5'
23342 3' -55 NC_005259.1 + 5434 0.7 0.543503
Target:  5'- -aGGUCugcGCCCgcUGCCGCCGACAgAUCGCa -3'
miRNA:   3'- gaUCAG---UGGG--GCGGUGGUUGU-UGGUG- -5'
23342 3' -55 NC_005259.1 + 12319 0.7 0.543503
Target:  5'- -cGGUgCGCaCCGCCGCCAGCucacgcACCGCc -3'
miRNA:   3'- gaUCA-GUGgGGCGGUGGUUGu-----UGGUG- -5'
23342 3' -55 NC_005259.1 + 13513 0.7 0.543503
Target:  5'- -cGGUCugUCgGUCACCGagacuGCGGCCACc -3'
miRNA:   3'- gaUCAGugGGgCGGUGGU-----UGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 28220 0.7 0.543503
Target:  5'- -cGGUCGUgCCGCCACCGuCGGCgGCg -3'
miRNA:   3'- gaUCAGUGgGGCGGUGGUuGUUGgUG- -5'
23342 3' -55 NC_005259.1 + 31116 0.7 0.564887
Target:  5'- -gAGUCGCCCgaUGUCGCCGAUGAUCGg -3'
miRNA:   3'- gaUCAGUGGG--GCGGUGGUUGUUGGUg -5'
23342 3' -55 NC_005259.1 + 66279 0.7 0.564887
Target:  5'- -cGGcUCACgCCGCCACCAu---CCACu -3'
miRNA:   3'- gaUC-AGUGgGGCGGUGGUuguuGGUG- -5'
23342 3' -55 NC_005259.1 + 20719 0.7 0.569192
Target:  5'- ---uUCACCCCGCCGCgCGAaaugacguauuggucCGGCCAUc -3'
miRNA:   3'- gaucAGUGGGGCGGUG-GUU---------------GUUGGUG- -5'
23342 3' -55 NC_005259.1 + 46934 0.69 0.575664
Target:  5'- -gAGcUugCCCGCCgcGCCGcCGACCGCg -3'
miRNA:   3'- gaUCaGugGGGCGG--UGGUuGUUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.