miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23342 3' -55 NC_005259.1 + 2820 1.1 0.001044
Target:  5'- cCUAGUCACCCCGCCACCAACAACCACg -3'
miRNA:   3'- -GAUCAGUGGGGCGGUGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 67753 0.81 0.123697
Target:  5'- aCUAGgcCGCCCCgGCCACCGGCcaccGACCACg -3'
miRNA:   3'- -GAUCa-GUGGGG-CGGUGGUUG----UUGGUG- -5'
23342 3' -55 NC_005259.1 + 44515 0.78 0.191311
Target:  5'- cCUGGcCACCCaCGCCGCCGcccgGCAGuCCACu -3'
miRNA:   3'- -GAUCaGUGGG-GCGGUGGU----UGUU-GGUG- -5'
23342 3' -55 NC_005259.1 + 8009 0.77 0.218332
Target:  5'- -cGGUagcCCCCGCC-CCGGCGGCCACc -3'
miRNA:   3'- gaUCAgu-GGGGCGGuGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 20418 0.77 0.230024
Target:  5'- -aGGUCuACCCgGUCACCGAC-GCCACa -3'
miRNA:   3'- gaUCAG-UGGGgCGGUGGUUGuUGGUG- -5'
23342 3' -55 NC_005259.1 + 13701 0.76 0.261572
Target:  5'- -cGGUCgACCCCGCCucgacACCGACAAUCGa -3'
miRNA:   3'- gaUCAG-UGGGGCGG-----UGGUUGUUGGUg -5'
23342 3' -55 NC_005259.1 + 48416 0.75 0.275145
Target:  5'- -gAGUCACCgcgaCCGCCACCAccgaggcgcgagGCAGCgGCa -3'
miRNA:   3'- gaUCAGUGG----GGCGGUGGU------------UGUUGgUG- -5'
23342 3' -55 NC_005259.1 + 28795 0.75 0.296552
Target:  5'- -cGGUCGCUaCGCCAUCGAC-ACCACg -3'
miRNA:   3'- gaUCAGUGGgGCGGUGGUUGuUGGUG- -5'
23342 3' -55 NC_005259.1 + 13896 0.74 0.319231
Target:  5'- --cGagACCCCGacaACCAACAACCACa -3'
miRNA:   3'- gauCagUGGGGCgg-UGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 16957 0.73 0.368412
Target:  5'- --cGcCAUUCCGaCACCAACAACCACg -3'
miRNA:   3'- gauCaGUGGGGCgGUGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 14269 0.73 0.368412
Target:  5'- --cGUCACCCCGucgacaCCGCCugccCAACCACc -3'
miRNA:   3'- gauCAGUGGGGC------GGUGGuu--GUUGGUG- -5'
23342 3' -55 NC_005259.1 + 3629 0.73 0.377099
Target:  5'- -cGGcUCGCUgagCUGaCCACCAACAACCACg -3'
miRNA:   3'- gaUC-AGUGG---GGC-GGUGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 65120 0.73 0.385922
Target:  5'- --cGUCACCguCgGCgCACCGGCGGCCACc -3'
miRNA:   3'- gauCAGUGG--GgCG-GUGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 37159 0.73 0.39488
Target:  5'- --cGUCACCgCCGCgccCGCCGAC-GCCGCg -3'
miRNA:   3'- gauCAGUGG-GGCG---GUGGUUGuUGGUG- -5'
23342 3' -55 NC_005259.1 + 3687 0.72 0.403972
Target:  5'- --cGUCACCgCCGCCcagcuugagACCGGCGACCu- -3'
miRNA:   3'- gauCAGUGG-GGCGG---------UGGUUGUUGGug -5'
23342 3' -55 NC_005259.1 + 7514 0.72 0.422546
Target:  5'- -cGGgagaCCCGCCACCAcACAACUACa -3'
miRNA:   3'- gaUCagugGGGCGGUGGU-UGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 19785 0.72 0.422546
Target:  5'- -cAG-CACCaa-CCACCAACAACCACa -3'
miRNA:   3'- gaUCaGUGGggcGGUGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 57988 0.72 0.432024
Target:  5'- --cGUgACCCCGgUcgaGCCAGCGACCAUg -3'
miRNA:   3'- gauCAgUGGGGCgG---UGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 6911 0.72 0.451345
Target:  5'- ----gCGCCgCCGCCAUCGAgAACCGCc -3'
miRNA:   3'- gaucaGUGG-GGCGGUGGUUgUUGGUG- -5'
23342 3' -55 NC_005259.1 + 35512 0.72 0.451345
Target:  5'- --cGUUGCCgCCGCCGCCGgGCAcACCGCc -3'
miRNA:   3'- gauCAGUGG-GGCGGUGGU-UGU-UGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.