Results 1 - 20 of 111 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23342 | 3' | -55 | NC_005259.1 | + | 3490 | 0.65 | 0.797933 |
Target: 5'- ----aCACCCUGCC-UCAcGCGACCAUg -3' miRNA: 3'- gaucaGUGGGGCGGuGGU-UGUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 65120 | 0.73 | 0.385922 |
Target: 5'- --cGUCACCguCgGCgCACCGGCGGCCACc -3' miRNA: 3'- gauCAGUGG--GgCG-GUGGUUGUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 37159 | 0.73 | 0.39488 |
Target: 5'- --cGUCACCgCCGCgccCGCCGAC-GCCGCg -3' miRNA: 3'- gauCAGUGG-GGCG---GUGGUUGuUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 3687 | 0.72 | 0.403972 |
Target: 5'- --cGUCACCgCCGCCcagcuugagACCGGCGACCu- -3' miRNA: 3'- gauCAGUGG-GGCGG---------UGGUUGUUGGug -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 19785 | 0.72 | 0.422546 |
Target: 5'- -cAG-CACCaa-CCACCAACAACCACa -3' miRNA: 3'- gaUCaGUGGggcGGUGGUUGUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 7514 | 0.72 | 0.422546 |
Target: 5'- -cGGgagaCCCGCCACCAcACAACUACa -3' miRNA: 3'- gaUCagugGGGCGGUGGU-UGUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 57988 | 0.72 | 0.432024 |
Target: 5'- --cGUgACCCCGgUcgaGCCAGCGACCAUg -3' miRNA: 3'- gauCAgUGGGGCgG---UGGUUGUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 25118 | 0.72 | 0.451345 |
Target: 5'- -aGGUCgACCCCGCCGaccuccCCGACGugACCAa -3' miRNA: 3'- gaUCAG-UGGGGCGGU------GGUUGU--UGGUg -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 6911 | 0.72 | 0.451345 |
Target: 5'- ----gCGCCgCCGCCAUCGAgAACCGCc -3' miRNA: 3'- gaucaGUGG-GGCGGUGGUUgUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 3629 | 0.73 | 0.377099 |
Target: 5'- -cGGcUCGCUgagCUGaCCACCAACAACCACg -3' miRNA: 3'- gaUC-AGUGG---GGC-GGUGGUUGUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 16957 | 0.73 | 0.368412 |
Target: 5'- --cGcCAUUCCGaCACCAACAACCACg -3' miRNA: 3'- gauCaGUGGGGCgGUGGUUGUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 14269 | 0.73 | 0.368412 |
Target: 5'- --cGUCACCCCGucgacaCCGCCugccCAACCACc -3' miRNA: 3'- gauCAGUGGGGC------GGUGGuu--GUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 67753 | 0.81 | 0.123697 |
Target: 5'- aCUAGgcCGCCCCgGCCACCGGCcaccGACCACg -3' miRNA: 3'- -GAUCa-GUGGGG-CGGUGGUUG----UUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 44515 | 0.78 | 0.191311 |
Target: 5'- cCUGGcCACCCaCGCCGCCGcccgGCAGuCCACu -3' miRNA: 3'- -GAUCaGUGGG-GCGGUGGU----UGUU-GGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 8009 | 0.77 | 0.218332 |
Target: 5'- -cGGUagcCCCCGCC-CCGGCGGCCACc -3' miRNA: 3'- gaUCAgu-GGGGCGGuGGUUGUUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 20418 | 0.77 | 0.230024 |
Target: 5'- -aGGUCuACCCgGUCACCGAC-GCCACa -3' miRNA: 3'- gaUCAG-UGGGgCGGUGGUUGuUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 13701 | 0.76 | 0.261572 |
Target: 5'- -cGGUCgACCCCGCCucgacACCGACAAUCGa -3' miRNA: 3'- gaUCAG-UGGGGCGG-----UGGUUGUUGGUg -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 48416 | 0.75 | 0.275145 |
Target: 5'- -gAGUCACCgcgaCCGCCACCAccgaggcgcgagGCAGCgGCa -3' miRNA: 3'- gaUCAGUGG----GGCGGUGGU------------UGUUGgUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 28795 | 0.75 | 0.296552 |
Target: 5'- -cGGUCGCUaCGCCAUCGAC-ACCACg -3' miRNA: 3'- gaUCAGUGGgGCGGUGGUUGuUGGUG- -5' |
|||||||
23342 | 3' | -55 | NC_005259.1 | + | 13896 | 0.74 | 0.319231 |
Target: 5'- --cGagACCCCGacaACCAACAACCACa -3' miRNA: 3'- gauCagUGGGGCgg-UGGUUGUUGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home