miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23342 3' -55 NC_005259.1 + 33308 0.65 0.797933
Target:  5'- -cGGcUCgAUCCCGCCGUCGGCggUCACg -3'
miRNA:   3'- gaUC-AG-UGGGGCGGUGGUUGuuGGUG- -5'
23342 3' -55 NC_005259.1 + 3490 0.65 0.797933
Target:  5'- ----aCACCCUGCC-UCAcGCGACCAUg -3'
miRNA:   3'- gaucaGUGGGGCGGuGGU-UGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 42821 0.66 0.778417
Target:  5'- gUGGUauuGCUgCCGCCGCCGA-AACCGCc -3'
miRNA:   3'- gAUCAg--UGG-GGCGGUGGUUgUUGGUG- -5'
23342 3' -55 NC_005259.1 + 13601 0.66 0.758304
Target:  5'- ---uUCGauUgCCGCUACCAcgGCAACCACa -3'
miRNA:   3'- gaucAGU--GgGGCGGUGGU--UGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 14694 0.66 0.778417
Target:  5'- uCUGcUCGacCCCCGCCGCgacgaaCAGCAcGCCGCg -3'
miRNA:   3'- -GAUcAGU--GGGGCGGUG------GUUGU-UGGUG- -5'
23342 3' -55 NC_005259.1 + 40868 0.66 0.778417
Target:  5'- aUGGcCGCCCacaGCuCACCGGCcACCGu -3'
miRNA:   3'- gAUCaGUGGGg--CG-GUGGUUGuUGGUg -5'
23342 3' -55 NC_005259.1 + 55274 0.66 0.777425
Target:  5'- gCUAGUCACCUgucccucaaUugagggacguuugGCCGCgugCGACGACCACa -3'
miRNA:   3'- -GAUCAGUGGG---------G-------------CGGUG---GUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 1516 0.66 0.778417
Target:  5'- ---cUCACgCUGUCACUGACGAUCACc -3'
miRNA:   3'- gaucAGUGgGGCGGUGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 1914 0.66 0.787278
Target:  5'- -gAGgaagCGCgCCGCCccaaaauGCCGACGGuCCACa -3'
miRNA:   3'- gaUCa---GUGgGGCGG-------UGGUUGUU-GGUG- -5'
23342 3' -55 NC_005259.1 + 42638 0.66 0.778417
Target:  5'- gUAGgCACCUCgGCC-CCGauguggGCGGCCACg -3'
miRNA:   3'- gAUCaGUGGGG-CGGuGGU------UGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 13020 0.66 0.76843
Target:  5'- --cGcCGCCCgGCC-CCAGCAcGCCAa -3'
miRNA:   3'- gauCaGUGGGgCGGuGGUUGU-UGGUg -5'
23342 3' -55 NC_005259.1 + 61853 0.66 0.758304
Target:  5'- -gAG-CACCUCgGCCACCGccucGCGuGCCGCg -3'
miRNA:   3'- gaUCaGUGGGG-CGGUGGU----UGU-UGGUG- -5'
23342 3' -55 NC_005259.1 + 35543 0.66 0.758304
Target:  5'- --cGUCGCCgauCCGCCcgaugacuuGCCGcCGACCGCc -3'
miRNA:   3'- gauCAGUGG---GGCGG---------UGGUuGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 13568 0.66 0.758304
Target:  5'- -----gACCCCGCC-CCGACAcCCGa -3'
miRNA:   3'- gaucagUGGGGCGGuGGUUGUuGGUg -5'
23342 3' -55 NC_005259.1 + 23434 0.66 0.778417
Target:  5'- -aAG-CAgCCCGCCACCGcCAAgCAg -3'
miRNA:   3'- gaUCaGUgGGGCGGUGGUuGUUgGUg -5'
23342 3' -55 NC_005259.1 + 47963 0.66 0.778417
Target:  5'- aUGGcCGCCgCGCCGCCcGCGaauauGCCGg -3'
miRNA:   3'- gAUCaGUGGgGCGGUGGuUGU-----UGGUg -5'
23342 3' -55 NC_005259.1 + 39324 0.66 0.748051
Target:  5'- --uGUCGCgCCGCUggugACCGucaacuCGACCACg -3'
miRNA:   3'- gauCAGUGgGGCGG----UGGUu-----GUUGGUG- -5'
23342 3' -55 NC_005259.1 + 9539 0.66 0.748051
Target:  5'- -gGGUCACCggagagCUGCCcgGCCu-CGACCGCg -3'
miRNA:   3'- gaUCAGUGG------GGCGG--UGGuuGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 38948 0.66 0.778417
Target:  5'- -cGGU-GCCgCUGCCGCCGAgAGCCuGCa -3'
miRNA:   3'- gaUCAgUGG-GGCGGUGGUUgUUGG-UG- -5'
23342 3' -55 NC_005259.1 + 19648 0.66 0.76843
Target:  5'- ---cUCACCggcaCCGCCuCgGGCAGCCGCu -3'
miRNA:   3'- gaucAGUGG----GGCGGuGgUUGUUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.