miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23342 3' -55 NC_005259.1 + 318 0.67 0.705994
Target:  5'- -gGGUgCGUCCgGCCAacgcacaccuCCGACAACCACg -3'
miRNA:   3'- gaUCA-GUGGGgCGGU----------GGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 1362 0.7 0.53291
Target:  5'- aCUGGgccgcUCGCCgCGCCGCCcGCGAggcCCGCg -3'
miRNA:   3'- -GAUC-----AGUGGgGCGGUGGuUGUU---GGUG- -5'
23342 3' -55 NC_005259.1 + 1516 0.66 0.778417
Target:  5'- ---cUCACgCUGUCACUGACGAUCACc -3'
miRNA:   3'- gaucAGUGgGGCGGUGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 1835 0.68 0.68125
Target:  5'- cCUGcUCGCCgCUGCCGCCGAgGccgagaaagccgccGCCGCg -3'
miRNA:   3'- -GAUcAGUGG-GGCGGUGGUUgU--------------UGGUG- -5'
23342 3' -55 NC_005259.1 + 1914 0.66 0.787278
Target:  5'- -gAGgaagCGCgCCGCCccaaaauGCCGACGGuCCACa -3'
miRNA:   3'- gaUCa---GUGgGGCGG-------UGGUUGUU-GGUG- -5'
23342 3' -55 NC_005259.1 + 2820 1.1 0.001044
Target:  5'- cCUAGUCACCCCGCCACCAACAACCACg -3'
miRNA:   3'- -GAUCAGUGGGGCGGUGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 3490 0.65 0.797933
Target:  5'- ----aCACCCUGCC-UCAcGCGACCAUg -3'
miRNA:   3'- gaucaGUGGGGCGGuGGU-UGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 3629 0.73 0.377099
Target:  5'- -cGGcUCGCUgagCUGaCCACCAACAACCACg -3'
miRNA:   3'- gaUC-AGUGG---GGC-GGUGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 3687 0.72 0.403972
Target:  5'- --cGUCACCgCCGCCcagcuugagACCGGCGACCu- -3'
miRNA:   3'- gauCAGUGG-GGCGG---------UGGUUGUUGGug -5'
23342 3' -55 NC_005259.1 + 4032 0.67 0.694198
Target:  5'- -cGGUCAagguucacagaauCCCCGCCACCc-CAACaCAUu -3'
miRNA:   3'- gaUCAGU-------------GGGGCGGUGGuuGUUG-GUG- -5'
23342 3' -55 NC_005259.1 + 4173 0.7 0.53291
Target:  5'- aUGGUCACgCUGCUGCgCGAgacCAACCGCa -3'
miRNA:   3'- gAUCAGUGgGGCGGUG-GUU---GUUGGUG- -5'
23342 3' -55 NC_005259.1 + 5434 0.7 0.543503
Target:  5'- -aGGUCugcGCCCgcUGCCGCCGACAgAUCGCa -3'
miRNA:   3'- gaUCAG---UGGG--GCGGUGGUUGU-UGGUG- -5'
23342 3' -55 NC_005259.1 + 6607 0.68 0.6519
Target:  5'- -cGGaUCACCCCGUCgaucaagauuGCCAGCGgguCCGCc -3'
miRNA:   3'- gaUC-AGUGGGGCGG----------UGGUUGUu--GGUG- -5'
23342 3' -55 NC_005259.1 + 6911 0.72 0.451345
Target:  5'- ----gCGCCgCCGCCAUCGAgAACCGCc -3'
miRNA:   3'- gaucaGUGG-GGCGGUGGUUgUUGGUG- -5'
23342 3' -55 NC_005259.1 + 7285 0.68 0.684494
Target:  5'- ----cCGCCCCGCCcCCAAgcACUACa -3'
miRNA:   3'- gaucaGUGGGGCGGuGGUUguUGGUG- -5'
23342 3' -55 NC_005259.1 + 7514 0.72 0.422546
Target:  5'- -cGGgagaCCCGCCACCAcACAACUACa -3'
miRNA:   3'- gaUCagugGGGCGGUGGU-UGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 7578 0.68 0.640986
Target:  5'- ---uUCGCgCCGCCGCCGcCGACCuCa -3'
miRNA:   3'- gaucAGUGgGGCGGUGGUuGUUGGuG- -5'
23342 3' -55 NC_005259.1 + 8009 0.77 0.218332
Target:  5'- -cGGUagcCCCCGCC-CCGGCGGCCACc -3'
miRNA:   3'- gaUCAgu-GGGGCGGuGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 8057 0.67 0.716643
Target:  5'- ----cCGCCggUCGCCGCCGACAucgagaucguGCCGCg -3'
miRNA:   3'- gaucaGUGG--GGCGGUGGUUGU----------UGGUG- -5'
23342 3' -55 NC_005259.1 + 9127 0.66 0.788255
Target:  5'- ----gCGCCCCGgUACgGGCAGCCGu -3'
miRNA:   3'- gaucaGUGGGGCgGUGgUUGUUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.