miRNA display CGI


Results 1 - 20 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23342 3' -55 NC_005259.1 + 68465 0.66 0.788255
Target:  5'- uUGGUCACCgCCGUgACgCGACcuuuGACcCACg -3'
miRNA:   3'- gAUCAGUGG-GGCGgUG-GUUG----UUG-GUG- -5'
23342 3' -55 NC_005259.1 + 67753 0.81 0.123697
Target:  5'- aCUAGgcCGCCCCgGCCACCGGCcaccGACCACg -3'
miRNA:   3'- -GAUCa-GUGGGG-CGGUGGUUG----UUGGUG- -5'
23342 3' -55 NC_005259.1 + 66740 0.68 0.630064
Target:  5'- -cGGUCaggcugaugcuGCCCgGCCuGCCAGuCGACCGCc -3'
miRNA:   3'- gaUCAG-----------UGGGgCGG-UGGUU-GUUGGUG- -5'
23342 3' -55 NC_005259.1 + 66279 0.7 0.564887
Target:  5'- -cGGcUCACgCCGCCACCAu---CCACu -3'
miRNA:   3'- gaUC-AGUGgGGCGGUGGUuguuGGUG- -5'
23342 3' -55 NC_005259.1 + 65120 0.73 0.385922
Target:  5'- --cGUCACCguCgGCgCACCGGCGGCCACc -3'
miRNA:   3'- gauCAGUGG--GgCG-GUGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 64669 0.68 0.673664
Target:  5'- ---aUCACCCa--CACCAGCAccGCCGCg -3'
miRNA:   3'- gaucAGUGGGgcgGUGGUUGU--UGGUG- -5'
23342 3' -55 NC_005259.1 + 63410 0.71 0.481186
Target:  5'- aUGGUUGCCCuUGCUcauGCCgAGCAGCCGCu -3'
miRNA:   3'- gAUCAGUGGG-GCGG---UGG-UUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 61853 0.66 0.758304
Target:  5'- -gAG-CACCUCgGCCACCGccucGCGuGCCGCg -3'
miRNA:   3'- gaUCaGUGGGG-CGGUGGU----UGU-UGGUG- -5'
23342 3' -55 NC_005259.1 + 60267 0.68 0.630064
Target:  5'- gCUGGcCACCagCGCUGCCgGGCGGCCAUc -3'
miRNA:   3'- -GAUCaGUGGg-GCGGUGG-UUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 57988 0.72 0.432024
Target:  5'- --cGUgACCCCGgUcgaGCCAGCGACCAUg -3'
miRNA:   3'- gauCAgUGGGGCgG---UGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 57732 0.68 0.630064
Target:  5'- -cAGUCACCCaCGUaCugCAACGcgauguugcgaGCCGCg -3'
miRNA:   3'- gaUCAGUGGG-GCG-GugGUUGU-----------UGGUG- -5'
23342 3' -55 NC_005259.1 + 56732 0.71 0.47113
Target:  5'- --cGUCGacguaUCCGCCACCGAUGACcCACg -3'
miRNA:   3'- gauCAGUg----GGGCGGUGGUUGUUG-GUG- -5'
23342 3' -55 NC_005259.1 + 56269 0.69 0.615869
Target:  5'- -gAG-CGCCgCCGCCcggcccguaucggcACCAGCAgACCACg -3'
miRNA:   3'- gaUCaGUGG-GGCGG--------------UGGUUGU-UGGUG- -5'
23342 3' -55 NC_005259.1 + 55274 0.66 0.777425
Target:  5'- gCUAGUCACCUgucccucaaUugagggacguuugGCCGCgugCGACGACCACa -3'
miRNA:   3'- -GAUCAGUGGG---------G-------------CGGUG---GUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 53715 0.71 0.481186
Target:  5'- gUGGUCACCgCGCCGCUGAUggUgAUg -3'
miRNA:   3'- gAUCAGUGGgGCGGUGGUUGuuGgUG- -5'
23342 3' -55 NC_005259.1 + 53228 0.66 0.787278
Target:  5'- ----gCGCCCugcuugagguucgCGCCGCCGACAccgucGCCGCc -3'
miRNA:   3'- gaucaGUGGG-------------GCGGUGGUUGU-----UGGUG- -5'
23342 3' -55 NC_005259.1 + 48416 0.75 0.275145
Target:  5'- -gAGUCACCgcgaCCGCCACCAccgaggcgcgagGCAGCgGCa -3'
miRNA:   3'- gaUCAGUGG----GGCGGUGGU------------UGUUGgUG- -5'
23342 3' -55 NC_005259.1 + 48140 0.68 0.662796
Target:  5'- ----cCACCgCCGCC-CCGGCcACCACc -3'
miRNA:   3'- gaucaGUGG-GGCGGuGGUUGuUGGUG- -5'
23342 3' -55 NC_005259.1 + 47963 0.66 0.778417
Target:  5'- aUGGcCGCCgCGCCGCCcGCGaauauGCCGg -3'
miRNA:   3'- gAUCaGUGGgGCGGUGGuUGU-----UGGUg -5'
23342 3' -55 NC_005259.1 + 46934 0.69 0.575664
Target:  5'- -gAGcUugCCCGCCgcGCCGcCGACCGCg -3'
miRNA:   3'- gaUCaGugGGGCGG--UGGUuGUUGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.