miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23342 3' -55 NC_005259.1 + 9539 0.66 0.748051
Target:  5'- -gGGUCACCggagagCUGCCcgGCCu-CGACCGCg -3'
miRNA:   3'- gaUCAGUGG------GGCGG--UGGuuGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 9923 0.68 0.688812
Target:  5'- gCUGGUCAUugcgguugaacacguUgCGCCACCAAucgagcCGACCGCc -3'
miRNA:   3'- -GAUCAGUG---------------GgGCGGUGGUU------GUUGGUG- -5'
23342 3' -55 NC_005259.1 + 12319 0.7 0.543503
Target:  5'- -cGGUgCGCaCCGCCGCCAGCucacgcACCGCc -3'
miRNA:   3'- gaUCA-GUGgGGCGGUGGUUGu-----UGGUG- -5'
23342 3' -55 NC_005259.1 + 12894 0.68 0.630064
Target:  5'- -cGGUCACCuaCCGUCggaucaugACCAACAACCu- -3'
miRNA:   3'- gaUCAGUGG--GGCGG--------UGGUUGUUGGug -5'
23342 3' -55 NC_005259.1 + 13020 0.66 0.76843
Target:  5'- --cGcCGCCCgGCC-CCAGCAcGCCAa -3'
miRNA:   3'- gauCaGUGGGgCGGuGGUUGU-UGGUg -5'
23342 3' -55 NC_005259.1 + 13343 0.71 0.481186
Target:  5'- -cGGgacCGCCCCGCCGCac-CGAUCACa -3'
miRNA:   3'- gaUCa--GUGGGGCGGUGguuGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 13513 0.7 0.543503
Target:  5'- -cGGUCugUCgGUCACCGagacuGCGGCCACc -3'
miRNA:   3'- gaUCAGugGGgCGGUGGU-----UGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 13568 0.66 0.758304
Target:  5'- -----gACCCCGCC-CCGACAcCCGa -3'
miRNA:   3'- gaucagUGGGGCGGuGGUUGUuGGUg -5'
23342 3' -55 NC_005259.1 + 13601 0.66 0.758304
Target:  5'- ---uUCGauUgCCGCUACCAcgGCAACCACa -3'
miRNA:   3'- gaucAGU--GgGGCGGUGGU--UGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 13701 0.76 0.261572
Target:  5'- -cGGUCgACCCCGCCucgacACCGACAAUCGa -3'
miRNA:   3'- gaUCAG-UGGGGCGG-----UGGUUGUUGGUg -5'
23342 3' -55 NC_005259.1 + 13896 0.74 0.319231
Target:  5'- --cGagACCCCGacaACCAACAACCACa -3'
miRNA:   3'- gauCagUGGGGCgg-UGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 14269 0.73 0.368412
Target:  5'- --cGUCACCCCGucgacaCCGCCugccCAACCACc -3'
miRNA:   3'- gauCAGUGGGGC------GGUGGuu--GUUGGUG- -5'
23342 3' -55 NC_005259.1 + 14315 0.66 0.788255
Target:  5'- aUGGcCGCCCucgaCGCCGCCGcccGCGugcggGCCGCc -3'
miRNA:   3'- gAUCaGUGGG----GCGGUGGU---UGU-----UGGUG- -5'
23342 3' -55 NC_005259.1 + 14694 0.66 0.778417
Target:  5'- uCUGcUCGacCCCCGCCGCgacgaaCAGCAcGCCGCg -3'
miRNA:   3'- -GAUcAGU--GGGGCGGUG------GUUGU-UGGUG- -5'
23342 3' -55 NC_005259.1 + 16634 0.67 0.715582
Target:  5'- -aGGcCACCUacggcgaCGCCGCCGACAauuucggggugACCGCc -3'
miRNA:   3'- gaUCaGUGGG-------GCGGUGGUUGU-----------UGGUG- -5'
23342 3' -55 NC_005259.1 + 16957 0.73 0.368412
Target:  5'- --cGcCAUUCCGaCACCAACAACCACg -3'
miRNA:   3'- gauCaGUGGGGCgGUGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 18213 0.68 0.673664
Target:  5'- -aGGUCgACCCCGaUCACgCGAUGACCGg -3'
miRNA:   3'- gaUCAG-UGGGGC-GGUG-GUUGUUGGUg -5'
23342 3' -55 NC_005259.1 + 18401 0.66 0.76843
Target:  5'- -gAG-CACCUCGCCgaGCCcGCGcccGCCACc -3'
miRNA:   3'- gaUCaGUGGGGCGG--UGGuUGU---UGGUG- -5'
23342 3' -55 NC_005259.1 + 18966 0.67 0.705994
Target:  5'- -gGGUgACCUCGCCGCguACAucGCCcgGCa -3'
miRNA:   3'- gaUCAgUGGGGCGGUGguUGU--UGG--UG- -5'
23342 3' -55 NC_005259.1 + 19648 0.66 0.76843
Target:  5'- ---cUCACCggcaCCGCCuCgGGCAGCCGCu -3'
miRNA:   3'- gaucAGUGG----GGCGGuGgUUGUUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.