miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23343 3' -54.1 NC_005259.1 + 41633 0.66 0.805958
Target:  5'- cAUGGUggCGgUGCCGGUCUGCgggCGc -3'
miRNA:   3'- cUGCCAaaGUgGCGGCUAGACGa--GUu -5'
23343 3' -54.1 NC_005259.1 + 45908 0.66 0.79629
Target:  5'- cGGCGGg--CACCGCUGGUagaccgagGCUCu- -3'
miRNA:   3'- -CUGCCaaaGUGGCGGCUAga------CGAGuu -5'
23343 3' -54.1 NC_005259.1 + 11040 0.68 0.702835
Target:  5'- -cCGGguggUCACCgcaugacguGCCGAUCgGCUCAGc -3'
miRNA:   3'- cuGCCaa--AGUGG---------CGGCUAGaCGAGUU- -5'
23343 3' -54.1 NC_005259.1 + 39623 0.68 0.681001
Target:  5'- cGACGGUguacgCGCUGcCCGGUUUGUUCc- -3'
miRNA:   3'- -CUGCCAaa---GUGGC-GGCUAGACGAGuu -5'
23343 3' -54.1 NC_005259.1 + 37729 0.69 0.647924
Target:  5'- --aGGcacCGCCGCCGAcgagCUGCUCGAu -3'
miRNA:   3'- cugCCaaaGUGGCGGCUa---GACGAGUU- -5'
23343 3' -54.1 NC_005259.1 + 24121 0.7 0.58164
Target:  5'- gGGCGGggacuacacCGCCGCCGccCUGCUCGc -3'
miRNA:   3'- -CUGCCaaa------GUGGCGGCuaGACGAGUu -5'
23343 3' -54.1 NC_005259.1 + 61765 0.7 0.548945
Target:  5'- cGGCGGcaaUCACCGCCGcauUCUGCa--- -3'
miRNA:   3'- -CUGCCaa-AGUGGCGGCu--AGACGaguu -5'
23343 3' -54.1 NC_005259.1 + 61168 0.72 0.44229
Target:  5'- cGACGGUguaCGCCucgguauggcccucGCCGGUCUGCUUg- -3'
miRNA:   3'- -CUGCCAaa-GUGG--------------CGGCUAGACGAGuu -5'
23343 3' -54.1 NC_005259.1 + 26825 0.73 0.416281
Target:  5'- cGGCGGUggUGCCGgggCGGUCUGCUCGGg -3'
miRNA:   3'- -CUGCCAaaGUGGCg--GCUAGACGAGUU- -5'
23343 3' -54.1 NC_005259.1 + 55907 0.73 0.406888
Target:  5'- -cCGGggUCgcuggccagACCGCUGGUCUGCUCGg -3'
miRNA:   3'- cuGCCaaAG---------UGGCGGCUAGACGAGUu -5'
23343 3' -54.1 NC_005259.1 + 5082 0.74 0.370679
Target:  5'- cGACGGgccggugUCACCGgCGAUCUGCg--- -3'
miRNA:   3'- -CUGCCaa-----AGUGGCgGCUAGACGaguu -5'
23343 3' -54.1 NC_005259.1 + 2707 1.05 0.002609
Target:  5'- gGACGGUUUCACCGCCGAUCUGCUCAAc -3'
miRNA:   3'- -CUGCCAAAGUGGCGGCUAGACGAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.