Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23345 | 3' | -59.4 | NC_005259.1 | + | 27459 | 0.65 | 0.614273 |
Target: 5'- cGUCGcGCGggaaauuGgGGCCGGgguCGGUGugGc -3' miRNA: 3'- aCAGC-CGC-------UgUCGGCCau-GCCGCugC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 22364 | 0.66 | 0.601776 |
Target: 5'- cGUCGcGaCGACaagggcaaaagcccGGUCGGccuCGGCGACGu -3' miRNA: 3'- aCAGC-C-GCUG--------------UCGGCCau-GCCGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 61747 | 0.66 | 0.594501 |
Target: 5'- cGUcCGGCGAgA-UCuGUGCGGCGGCa -3' miRNA: 3'- aCA-GCCGCUgUcGGcCAUGCCGCUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 51477 | 0.66 | 0.594501 |
Target: 5'- -cUCGGCGACccacaccGCCGGggauaGGuCGACGc -3' miRNA: 3'- acAGCCGCUGu------CGGCCaug--CC-GCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 39719 | 0.66 | 0.588276 |
Target: 5'- cGUCGGUGAgCaaguucggagauaugGGCCGG-AUGuGCGACa -3' miRNA: 3'- aCAGCCGCU-G---------------UCGGCCaUGC-CGCUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 5070 | 0.66 | 0.584133 |
Target: 5'- cGUgGGCcgggucGACgGGCCGGUGucacCGGCGAUc -3' miRNA: 3'- aCAgCCG------CUG-UCGGCCAU----GCCGCUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 20140 | 0.66 | 0.563512 |
Target: 5'- cGUCGcgaugaCGGCAGCCGGUGCccuGGCcACc -3' miRNA: 3'- aCAGCc-----GCUGUCGGCCAUG---CCGcUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 66466 | 0.67 | 0.553273 |
Target: 5'- -cUCGGUGAC-GCUGGUgGCGGUGGu- -3' miRNA: 3'- acAGCCGCUGuCGGCCA-UGCCGCUgc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 10332 | 0.67 | 0.553273 |
Target: 5'- -cUCGGCGACGGgCu---CGGCGGCa -3' miRNA: 3'- acAGCCGCUGUCgGccauGCCGCUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 49705 | 0.67 | 0.54309 |
Target: 5'- cUGUCGGUGAgAuCCGGcagauauucgGCGgGCGGCGa -3' miRNA: 3'- -ACAGCCGCUgUcGGCCa---------UGC-CGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 27370 | 0.67 | 0.53297 |
Target: 5'- -cUUGGUGccCGGCaCGGUGacCGGCGGCGg -3' miRNA: 3'- acAGCCGCu-GUCG-GCCAU--GCCGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 39843 | 0.67 | 0.53297 |
Target: 5'- gGUCGGCGACAggauGCCGGUGa-GCu--- -3' miRNA: 3'- aCAGCCGCUGU----CGGCCAUgcCGcugc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 19175 | 0.67 | 0.525926 |
Target: 5'- cGUCGGCGcucaacggugcccucGaCAGCgagcucgUGGUGCGgGCGGCGa -3' miRNA: 3'- aCAGCCGC---------------U-GUCG-------GCCAUGC-CGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 4985 | 0.67 | 0.522917 |
Target: 5'- -uUCGGcCGAUGGCCGGgcacUACGGCaagGugGu -3' miRNA: 3'- acAGCC-GCUGUCGGCC----AUGCCG---CugC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 51563 | 0.67 | 0.522917 |
Target: 5'- cGUUGGggccaacgaucCGGCAGCCGGUGC--CGACa -3' miRNA: 3'- aCAGCC-----------GCUGUCGGCCAUGccGCUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 28905 | 0.67 | 0.516921 |
Target: 5'- uUGUCGGCGACgaggaacgccgccucAGCCaGaagcaGGCGGCa -3' miRNA: 3'- -ACAGCCGCUG---------------UCGGcCaug--CCGCUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 55332 | 0.67 | 0.512939 |
Target: 5'- gGUCuuGGCGGCAG-CGGU--GGCGAUGc -3' miRNA: 3'- aCAG--CCGCUGUCgGCCAugCCGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 64576 | 0.67 | 0.511945 |
Target: 5'- gUGUCGGCGAaacgGGCCagcacaccaacgaGGUgacugACGGCGAgCGc -3' miRNA: 3'- -ACAGCCGCUg---UCGG-------------CCA-----UGCCGCU-GC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 64215 | 0.68 | 0.493225 |
Target: 5'- cGcCGGuCGGCAGcCCGGUAuCGGgGuCGa -3' miRNA: 3'- aCaGCC-GCUGUC-GGCCAU-GCCgCuGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 61592 | 0.68 | 0.483498 |
Target: 5'- aUG-CGGUG--GGCCGGUGgGGuCGGCGg -3' miRNA: 3'- -ACaGCCGCugUCGGCCAUgCC-GCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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