miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23345 3' -59.4 NC_005259.1 + 68621 0.68 0.483498
Target:  5'- uUGUUGGC--CAGCCGGgcacccuCGGCGAa- -3'
miRNA:   3'- -ACAGCCGcuGUCGGCCau-----GCCGCUgc -5'
23345 3' -59.4 NC_005259.1 + 783 0.68 0.483498
Target:  5'- ---aGGCGGCuGCCcucGGUugGGUGGCc -3'
miRNA:   3'- acagCCGCUGuCGG---CCAugCCGCUGc -5'
23345 3' -59.4 NC_005259.1 + 60762 0.68 0.464329
Target:  5'- aGUCGGCu-CGGCgaGGUugGGCuGCGc -3'
miRNA:   3'- aCAGCCGcuGUCGg-CCAugCCGcUGC- -5'
23345 3' -59.4 NC_005259.1 + 64149 0.68 0.454894
Target:  5'- cGUCGGCGAU-GCCcuugacGUAguCGGCGACu -3'
miRNA:   3'- aCAGCCGCUGuCGGc-----CAU--GCCGCUGc -5'
23345 3' -59.4 NC_005259.1 + 42562 0.68 0.44371
Target:  5'- -cUCGGCGAgCAGCCGGUcgucaucgauaGGCGugaGCGa -3'
miRNA:   3'- acAGCCGCU-GUCGGCCAug---------CCGC---UGC- -5'
23345 3' -59.4 NC_005259.1 + 41099 0.69 0.418232
Target:  5'- aGUCGGCGGuCGG-CGGUAUGaCGAUGu -3'
miRNA:   3'- aCAGCCGCU-GUCgGCCAUGCcGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 58952 0.69 0.418232
Target:  5'- cGUCGGCcuuGGCcagcaGGUCGGgcagcucguCGGCGACGg -3'
miRNA:   3'- aCAGCCG---CUG-----UCGGCCau-------GCCGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 29952 0.69 0.40935
Target:  5'- --cCGGUcGCGGCUGGUGgGGCGgGCGg -3'
miRNA:   3'- acaGCCGcUGUCGGCCAUgCCGC-UGC- -5'
23345 3' -59.4 NC_005259.1 + 41790 0.69 0.391945
Target:  5'- -aUCGGCGAgCAGUCGGcagGCGGUuugcacuccGACGa -3'
miRNA:   3'- acAGCCGCU-GUCGGCCa--UGCCG---------CUGC- -5'
23345 3' -59.4 NC_005259.1 + 17360 0.7 0.383425
Target:  5'- gGUCGGCGGCucggcGCUGGUcguggucgACuGCGACa -3'
miRNA:   3'- aCAGCCGCUGu----CGGCCA--------UGcCGCUGc -5'
23345 3' -59.4 NC_005259.1 + 14056 0.7 0.358613
Target:  5'- cGUCGGCGACgAGaCCaGcACGGCGGUGg -3'
miRNA:   3'- aCAGCCGCUG-UC-GGcCaUGCCGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 31984 0.7 0.342707
Target:  5'- aG-CGGUGACGGCCauagcacacagGGUAUcGCGACGg -3'
miRNA:   3'- aCaGCCGCUGUCGG-----------CCAUGcCGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 60299 0.71 0.334947
Target:  5'- cGUCGGUG-CGGCCacGG-ACGGCGAa- -3'
miRNA:   3'- aCAGCCGCuGUCGG--CCaUGCCGCUgc -5'
23345 3' -59.4 NC_005259.1 + 27071 0.71 0.334947
Target:  5'- --aCGGCGACAucGCCGacauucUGCGGCGGCu -3'
miRNA:   3'- acaGCCGCUGU--CGGCc-----AUGCCGCUGc -5'
23345 3' -59.4 NC_005259.1 + 8369 0.71 0.298088
Target:  5'- -cUCGGCGGCGGCCucGGcauCGGCGAg- -3'
miRNA:   3'- acAGCCGCUGUCGG--CCau-GCCGCUgc -5'
23345 3' -59.4 NC_005259.1 + 13285 0.72 0.270925
Target:  5'- aUGUCGGgcaaguauugaCGugAGCCaGUGCGGCGGgGu -3'
miRNA:   3'- -ACAGCC-----------GCugUCGGcCAUGCCGCUgC- -5'
23345 3' -59.4 NC_005259.1 + 27403 0.72 0.258106
Target:  5'- cGgcagCGGCGGCAGCuCGGUGCccGCGAgGa -3'
miRNA:   3'- aCa---GCCGCUGUCG-GCCAUGc-CGCUgC- -5'
23345 3' -59.4 NC_005259.1 + 23617 0.73 0.238045
Target:  5'- cGU-GGCGGCAGCCagacggcucgguguGGUuucggcccgccgACGGCGACGg -3'
miRNA:   3'- aCAgCCGCUGUCGG--------------CCA------------UGCCGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 58916 0.73 0.233961
Target:  5'- cGUCGGCGGucuugucguCGGCgGGcGCGGUGGCa -3'
miRNA:   3'- aCAGCCGCU---------GUCGgCCaUGCCGCUGc -5'
23345 3' -59.4 NC_005259.1 + 12013 0.73 0.228229
Target:  5'- aGUCGGUGGCcuuGUaCGGUGCGgGCGGCa -3'
miRNA:   3'- aCAGCCGCUGu--CG-GCCAUGC-CGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.