Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23345 | 3' | -59.4 | NC_005259.1 | + | 27459 | 0.65 | 0.614273 |
Target: 5'- cGUCGcGCGggaaauuGgGGCCGGgguCGGUGugGc -3' miRNA: 3'- aCAGC-CGC-------UgUCGGCCau-GCCGCugC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 14056 | 0.7 | 0.358613 |
Target: 5'- cGUCGGCGACgAGaCCaGcACGGCGGUGg -3' miRNA: 3'- aCAGCCGCUG-UC-GGcCaUGCCGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 49632 | 0.84 | 0.040153 |
Target: 5'- -aUCGGCGGCAGCCGcGU-CGGCGAUGg -3' miRNA: 3'- acAGCCGCUGUCGGC-CAuGCCGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 12013 | 0.73 | 0.228229 |
Target: 5'- aGUCGGUGGCcuuGUaCGGUGCGgGCGGCa -3' miRNA: 3'- aCAGCCGCUGu--CG-GCCAUGC-CGCUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 58916 | 0.73 | 0.233961 |
Target: 5'- cGUCGGCGGucuugucguCGGCgGGcGCGGUGGCa -3' miRNA: 3'- aCAGCCGCU---------GUCGgCCaUGCCGCUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 23617 | 0.73 | 0.238045 |
Target: 5'- cGU-GGCGGCAGCCagacggcucgguguGGUuucggcccgccgACGGCGACGg -3' miRNA: 3'- aCAgCCGCUGUCGG--------------CCA------------UGCCGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 27403 | 0.72 | 0.258106 |
Target: 5'- cGgcagCGGCGGCAGCuCGGUGCccGCGAgGa -3' miRNA: 3'- aCa---GCCGCUGUCG-GCCAUGc-CGCUgC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 13285 | 0.72 | 0.270925 |
Target: 5'- aUGUCGGgcaaguauugaCGugAGCCaGUGCGGCGGgGu -3' miRNA: 3'- -ACAGCC-----------GCugUCGGcCAUGCCGCUgC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 8369 | 0.71 | 0.298088 |
Target: 5'- -cUCGGCGGCGGCCucGGcauCGGCGAg- -3' miRNA: 3'- acAGCCGCUGUCGG--CCau-GCCGCUgc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 27071 | 0.71 | 0.334947 |
Target: 5'- --aCGGCGACAucGCCGacauucUGCGGCGGCu -3' miRNA: 3'- acaGCCGCUGU--CGGCc-----AUGCCGCUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 60299 | 0.71 | 0.334947 |
Target: 5'- cGUCGGUG-CGGCCacGG-ACGGCGAa- -3' miRNA: 3'- aCAGCCGCuGUCGG--CCaUGCCGCUgc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 31984 | 0.7 | 0.342707 |
Target: 5'- aG-CGGUGACGGCCauagcacacagGGUAUcGCGACGg -3' miRNA: 3'- aCaGCCGCUGUCGG-----------CCAUGcCGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 2241 | 1.09 | 0.000651 |
Target: 5'- uUGUCGGCGACAGCCGGUACGGCGACGa -3' miRNA: 3'- -ACAGCCGCUGUCGGCCAUGCCGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 17360 | 0.7 | 0.383425 |
Target: 5'- gGUCGGCGGCucggcGCUGGUcguggucgACuGCGACa -3' miRNA: 3'- aCAGCCGCUGu----CGGCCA--------UGcCGCUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 41790 | 0.69 | 0.391945 |
Target: 5'- -aUCGGCGAgCAGUCGGcagGCGGUuugcacuccGACGa -3' miRNA: 3'- acAGCCGCU-GUCGGCCa--UGCCG---------CUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 29952 | 0.69 | 0.40935 |
Target: 5'- --cCGGUcGCGGCUGGUGgGGCGgGCGg -3' miRNA: 3'- acaGCCGcUGUCGGCCAUgCCGC-UGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 41099 | 0.69 | 0.418232 |
Target: 5'- aGUCGGCGGuCGG-CGGUAUGaCGAUGu -3' miRNA: 3'- aCAGCCGCU-GUCgGCCAUGCcGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 58952 | 0.69 | 0.418232 |
Target: 5'- cGUCGGCcuuGGCcagcaGGUCGGgcagcucguCGGCGACGg -3' miRNA: 3'- aCAGCCG---CUG-----UCGGCCau-------GCCGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 42562 | 0.68 | 0.44371 |
Target: 5'- -cUCGGCGAgCAGCCGGUcgucaucgauaGGCGugaGCGa -3' miRNA: 3'- acAGCCGCU-GUCGGCCAug---------CCGC---UGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 64149 | 0.68 | 0.454894 |
Target: 5'- cGUCGGCGAU-GCCcuugacGUAguCGGCGACu -3' miRNA: 3'- aCAGCCGCUGuCGGc-----CAU--GCCGCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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