miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23345 3' -59.4 NC_005259.1 + 31984 0.7 0.342707
Target:  5'- aG-CGGUGACGGCCauagcacacagGGUAUcGCGACGg -3'
miRNA:   3'- aCaGCCGCUGUCGG-----------CCAUGcCGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 39719 0.66 0.588276
Target:  5'- cGUCGGUGAgCaaguucggagauaugGGCCGG-AUGuGCGACa -3'
miRNA:   3'- aCAGCCGCU-G---------------UCGGCCaUGC-CGCUGc -5'
23345 3' -59.4 NC_005259.1 + 39843 0.67 0.53297
Target:  5'- gGUCGGCGACAggauGCCGGUGa-GCu--- -3'
miRNA:   3'- aCAGCCGCUGU----CGGCCAUgcCGcugc -5'
23345 3' -59.4 NC_005259.1 + 41099 0.69 0.418232
Target:  5'- aGUCGGCGGuCGG-CGGUAUGaCGAUGu -3'
miRNA:   3'- aCAGCCGCU-GUCgGCCAUGCcGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 41790 0.69 0.391945
Target:  5'- -aUCGGCGAgCAGUCGGcagGCGGUuugcacuccGACGa -3'
miRNA:   3'- acAGCCGCU-GUCGGCCa--UGCCG---------CUGC- -5'
23345 3' -59.4 NC_005259.1 + 42562 0.68 0.44371
Target:  5'- -cUCGGCGAgCAGCCGGUcgucaucgauaGGCGugaGCGa -3'
miRNA:   3'- acAGCCGCU-GUCGGCCAug---------CCGC---UGC- -5'
23345 3' -59.4 NC_005259.1 + 49632 0.84 0.040153
Target:  5'- -aUCGGCGGCAGCCGcGU-CGGCGAUGg -3'
miRNA:   3'- acAGCCGCUGUCGGC-CAuGCCGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 49705 0.67 0.54309
Target:  5'- cUGUCGGUGAgAuCCGGcagauauucgGCGgGCGGCGa -3'
miRNA:   3'- -ACAGCCGCUgUcGGCCa---------UGC-CGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 51477 0.66 0.594501
Target:  5'- -cUCGGCGACccacaccGCCGGggauaGGuCGACGc -3'
miRNA:   3'- acAGCCGCUGu------CGGCCaug--CC-GCUGC- -5'
23345 3' -59.4 NC_005259.1 + 51563 0.67 0.522917
Target:  5'- cGUUGGggccaacgaucCGGCAGCCGGUGC--CGACa -3'
miRNA:   3'- aCAGCC-----------GCUGUCGGCCAUGccGCUGc -5'
23345 3' -59.4 NC_005259.1 + 55332 0.67 0.512939
Target:  5'- gGUCuuGGCGGCAG-CGGU--GGCGAUGc -3'
miRNA:   3'- aCAG--CCGCUGUCgGCCAugCCGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 58916 0.73 0.233961
Target:  5'- cGUCGGCGGucuugucguCGGCgGGcGCGGUGGCa -3'
miRNA:   3'- aCAGCCGCU---------GUCGgCCaUGCCGCUGc -5'
23345 3' -59.4 NC_005259.1 + 58952 0.69 0.418232
Target:  5'- cGUCGGCcuuGGCcagcaGGUCGGgcagcucguCGGCGACGg -3'
miRNA:   3'- aCAGCCG---CUG-----UCGGCCau-------GCCGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 60299 0.71 0.334947
Target:  5'- cGUCGGUG-CGGCCacGG-ACGGCGAa- -3'
miRNA:   3'- aCAGCCGCuGUCGG--CCaUGCCGCUgc -5'
23345 3' -59.4 NC_005259.1 + 60762 0.68 0.464329
Target:  5'- aGUCGGCu-CGGCgaGGUugGGCuGCGc -3'
miRNA:   3'- aCAGCCGcuGUCGg-CCAugCCGcUGC- -5'
23345 3' -59.4 NC_005259.1 + 61592 0.68 0.483498
Target:  5'- aUG-CGGUG--GGCCGGUGgGGuCGGCGg -3'
miRNA:   3'- -ACaGCCGCugUCGGCCAUgCC-GCUGC- -5'
23345 3' -59.4 NC_005259.1 + 61747 0.66 0.594501
Target:  5'- cGUcCGGCGAgA-UCuGUGCGGCGGCa -3'
miRNA:   3'- aCA-GCCGCUgUcGGcCAUGCCGCUGc -5'
23345 3' -59.4 NC_005259.1 + 64149 0.68 0.454894
Target:  5'- cGUCGGCGAU-GCCcuugacGUAguCGGCGACu -3'
miRNA:   3'- aCAGCCGCUGuCGGc-----CAU--GCCGCUGc -5'
23345 3' -59.4 NC_005259.1 + 64215 0.68 0.493225
Target:  5'- cGcCGGuCGGCAGcCCGGUAuCGGgGuCGa -3'
miRNA:   3'- aCaGCC-GCUGUC-GGCCAU-GCCgCuGC- -5'
23345 3' -59.4 NC_005259.1 + 64576 0.67 0.511945
Target:  5'- gUGUCGGCGAaacgGGCCagcacaccaacgaGGUgacugACGGCGAgCGc -3'
miRNA:   3'- -ACAGCCGCUg---UCGG-------------CCA-----UGCCGCU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.