Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23345 | 3' | -59.4 | NC_005259.1 | + | 31984 | 0.7 | 0.342707 |
Target: 5'- aG-CGGUGACGGCCauagcacacagGGUAUcGCGACGg -3' miRNA: 3'- aCaGCCGCUGUCGG-----------CCAUGcCGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 39719 | 0.66 | 0.588276 |
Target: 5'- cGUCGGUGAgCaaguucggagauaugGGCCGG-AUGuGCGACa -3' miRNA: 3'- aCAGCCGCU-G---------------UCGGCCaUGC-CGCUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 39843 | 0.67 | 0.53297 |
Target: 5'- gGUCGGCGACAggauGCCGGUGa-GCu--- -3' miRNA: 3'- aCAGCCGCUGU----CGGCCAUgcCGcugc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 41099 | 0.69 | 0.418232 |
Target: 5'- aGUCGGCGGuCGG-CGGUAUGaCGAUGu -3' miRNA: 3'- aCAGCCGCU-GUCgGCCAUGCcGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 41790 | 0.69 | 0.391945 |
Target: 5'- -aUCGGCGAgCAGUCGGcagGCGGUuugcacuccGACGa -3' miRNA: 3'- acAGCCGCU-GUCGGCCa--UGCCG---------CUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 42562 | 0.68 | 0.44371 |
Target: 5'- -cUCGGCGAgCAGCCGGUcgucaucgauaGGCGugaGCGa -3' miRNA: 3'- acAGCCGCU-GUCGGCCAug---------CCGC---UGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 49632 | 0.84 | 0.040153 |
Target: 5'- -aUCGGCGGCAGCCGcGU-CGGCGAUGg -3' miRNA: 3'- acAGCCGCUGUCGGC-CAuGCCGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 49705 | 0.67 | 0.54309 |
Target: 5'- cUGUCGGUGAgAuCCGGcagauauucgGCGgGCGGCGa -3' miRNA: 3'- -ACAGCCGCUgUcGGCCa---------UGC-CGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 51477 | 0.66 | 0.594501 |
Target: 5'- -cUCGGCGACccacaccGCCGGggauaGGuCGACGc -3' miRNA: 3'- acAGCCGCUGu------CGGCCaug--CC-GCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 51563 | 0.67 | 0.522917 |
Target: 5'- cGUUGGggccaacgaucCGGCAGCCGGUGC--CGACa -3' miRNA: 3'- aCAGCC-----------GCUGUCGGCCAUGccGCUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 55332 | 0.67 | 0.512939 |
Target: 5'- gGUCuuGGCGGCAG-CGGU--GGCGAUGc -3' miRNA: 3'- aCAG--CCGCUGUCgGCCAugCCGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 58916 | 0.73 | 0.233961 |
Target: 5'- cGUCGGCGGucuugucguCGGCgGGcGCGGUGGCa -3' miRNA: 3'- aCAGCCGCU---------GUCGgCCaUGCCGCUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 58952 | 0.69 | 0.418232 |
Target: 5'- cGUCGGCcuuGGCcagcaGGUCGGgcagcucguCGGCGACGg -3' miRNA: 3'- aCAGCCG---CUG-----UCGGCCau-------GCCGCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 60299 | 0.71 | 0.334947 |
Target: 5'- cGUCGGUG-CGGCCacGG-ACGGCGAa- -3' miRNA: 3'- aCAGCCGCuGUCGG--CCaUGCCGCUgc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 60762 | 0.68 | 0.464329 |
Target: 5'- aGUCGGCu-CGGCgaGGUugGGCuGCGc -3' miRNA: 3'- aCAGCCGcuGUCGg-CCAugCCGcUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 61592 | 0.68 | 0.483498 |
Target: 5'- aUG-CGGUG--GGCCGGUGgGGuCGGCGg -3' miRNA: 3'- -ACaGCCGCugUCGGCCAUgCC-GCUGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 61747 | 0.66 | 0.594501 |
Target: 5'- cGUcCGGCGAgA-UCuGUGCGGCGGCa -3' miRNA: 3'- aCA-GCCGCUgUcGGcCAUGCCGCUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 64149 | 0.68 | 0.454894 |
Target: 5'- cGUCGGCGAU-GCCcuugacGUAguCGGCGACu -3' miRNA: 3'- aCAGCCGCUGuCGGc-----CAU--GCCGCUGc -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 64215 | 0.68 | 0.493225 |
Target: 5'- cGcCGGuCGGCAGcCCGGUAuCGGgGuCGa -3' miRNA: 3'- aCaGCC-GCUGUC-GGCCAU-GCCgCuGC- -5' |
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23345 | 3' | -59.4 | NC_005259.1 | + | 64576 | 0.67 | 0.511945 |
Target: 5'- gUGUCGGCGAaacgGGCCagcacaccaacgaGGUgacugACGGCGAgCGc -3' miRNA: 3'- -ACAGCCGCUg---UCGG-------------CCA-----UGCCGCU-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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