miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23345 3' -59.4 NC_005259.1 + 39719 0.66 0.588276
Target:  5'- cGUCGGUGAgCaaguucggagauaugGGCCGG-AUGuGCGACa -3'
miRNA:   3'- aCAGCCGCU-G---------------UCGGCCaUGC-CGCUGc -5'
23345 3' -59.4 NC_005259.1 + 31984 0.7 0.342707
Target:  5'- aG-CGGUGACGGCCauagcacacagGGUAUcGCGACGg -3'
miRNA:   3'- aCaGCCGCUGUCGG-----------CCAUGcCGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 29952 0.69 0.40935
Target:  5'- --cCGGUcGCGGCUGGUGgGGCGgGCGg -3'
miRNA:   3'- acaGCCGcUGUCGGCCAUgCCGC-UGC- -5'
23345 3' -59.4 NC_005259.1 + 28905 0.67 0.516921
Target:  5'- uUGUCGGCGACgaggaacgccgccucAGCCaGaagcaGGCGGCa -3'
miRNA:   3'- -ACAGCCGCUG---------------UCGGcCaug--CCGCUGc -5'
23345 3' -59.4 NC_005259.1 + 27459 0.65 0.614273
Target:  5'- cGUCGcGCGggaaauuGgGGCCGGgguCGGUGugGc -3'
miRNA:   3'- aCAGC-CGC-------UgUCGGCCau-GCCGCugC- -5'
23345 3' -59.4 NC_005259.1 + 27403 0.72 0.258106
Target:  5'- cGgcagCGGCGGCAGCuCGGUGCccGCGAgGa -3'
miRNA:   3'- aCa---GCCGCUGUCG-GCCAUGc-CGCUgC- -5'
23345 3' -59.4 NC_005259.1 + 27370 0.67 0.53297
Target:  5'- -cUUGGUGccCGGCaCGGUGacCGGCGGCGg -3'
miRNA:   3'- acAGCCGCu-GUCG-GCCAU--GCCGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 27071 0.71 0.334947
Target:  5'- --aCGGCGACAucGCCGacauucUGCGGCGGCu -3'
miRNA:   3'- acaGCCGCUGU--CGGCc-----AUGCCGCUGc -5'
23345 3' -59.4 NC_005259.1 + 23617 0.73 0.238045
Target:  5'- cGU-GGCGGCAGCCagacggcucgguguGGUuucggcccgccgACGGCGACGg -3'
miRNA:   3'- aCAgCCGCUGUCGG--------------CCA------------UGCCGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 22364 0.66 0.601776
Target:  5'- cGUCGcGaCGACaagggcaaaagcccGGUCGGccuCGGCGACGu -3'
miRNA:   3'- aCAGC-C-GCUG--------------UCGGCCau-GCCGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 20140 0.66 0.563512
Target:  5'- cGUCGcgaugaCGGCAGCCGGUGCccuGGCcACc -3'
miRNA:   3'- aCAGCc-----GCUGUCGGCCAUG---CCGcUGc -5'
23345 3' -59.4 NC_005259.1 + 19175 0.67 0.525926
Target:  5'- cGUCGGCGcucaacggugcccucGaCAGCgagcucgUGGUGCGgGCGGCGa -3'
miRNA:   3'- aCAGCCGC---------------U-GUCG-------GCCAUGC-CGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 17360 0.7 0.383425
Target:  5'- gGUCGGCGGCucggcGCUGGUcguggucgACuGCGACa -3'
miRNA:   3'- aCAGCCGCUGu----CGGCCA--------UGcCGCUGc -5'
23345 3' -59.4 NC_005259.1 + 14056 0.7 0.358613
Target:  5'- cGUCGGCGACgAGaCCaGcACGGCGGUGg -3'
miRNA:   3'- aCAGCCGCUG-UC-GGcCaUGCCGCUGC- -5'
23345 3' -59.4 NC_005259.1 + 13285 0.72 0.270925
Target:  5'- aUGUCGGgcaaguauugaCGugAGCCaGUGCGGCGGgGu -3'
miRNA:   3'- -ACAGCC-----------GCugUCGGcCAUGCCGCUgC- -5'
23345 3' -59.4 NC_005259.1 + 12013 0.73 0.228229
Target:  5'- aGUCGGUGGCcuuGUaCGGUGCGgGCGGCa -3'
miRNA:   3'- aCAGCCGCUGu--CG-GCCAUGC-CGCUGc -5'
23345 3' -59.4 NC_005259.1 + 10332 0.67 0.553273
Target:  5'- -cUCGGCGACGGgCu---CGGCGGCa -3'
miRNA:   3'- acAGCCGCUGUCgGccauGCCGCUGc -5'
23345 3' -59.4 NC_005259.1 + 8369 0.71 0.298088
Target:  5'- -cUCGGCGGCGGCCucGGcauCGGCGAg- -3'
miRNA:   3'- acAGCCGCUGUCGG--CCau-GCCGCUgc -5'
23345 3' -59.4 NC_005259.1 + 5070 0.66 0.584133
Target:  5'- cGUgGGCcgggucGACgGGCCGGUGucacCGGCGAUc -3'
miRNA:   3'- aCAgCCG------CUG-UCGGCCAU----GCCGCUGc -5'
23345 3' -59.4 NC_005259.1 + 4985 0.67 0.522917
Target:  5'- -uUCGGcCGAUGGCCGGgcacUACGGCaagGugGu -3'
miRNA:   3'- acAGCC-GCUGUCGGCC----AUGCCG---CugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.