miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23349 5' -62.2 NC_005259.1 + 36719 0.68 0.321498
Target:  5'- uGCCGCuCGa--CCcGCCGCGcCCGCCGg -3'
miRNA:   3'- -CGGCG-GCcacGGaUGGCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 37222 0.71 0.236601
Target:  5'- cGCCGCCGGggcgcugGCCcgUGCCGgauUGgcugCCGCCGu -3'
miRNA:   3'- -CGGCGGCCa------CGG--AUGGC---GCa---GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 37399 0.67 0.409644
Target:  5'- cGCCGCCcauGGUGUUguugacGCCGC--CCGCCGu -3'
miRNA:   3'- -CGGCGG---CCACGGa-----UGGCGcaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 37663 0.72 0.17974
Target:  5'- cGCCGCCGGUGCC-GCCacgguugguguauGUGcCCgcGCCGg -3'
miRNA:   3'- -CGGCGGCCACGGaUGG-------------CGCaGG--UGGC- -5'
23349 5' -62.2 NC_005259.1 + 38926 0.68 0.367751
Target:  5'- aGCaCGUCGGUGUUgcugugcccggUGCCGCuG-CCGCCGa -3'
miRNA:   3'- -CG-GCGGCCACGG-----------AUGGCG-CaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 39902 0.66 0.453464
Target:  5'- cGCCGCCGcccGCCUcgauccgucgaggGCCGCGUCgAggUCGu -3'
miRNA:   3'- -CGGCGGCca-CGGA-------------UGGCGCAGgU--GGC- -5'
23349 5' -62.2 NC_005259.1 + 40451 0.69 0.314225
Target:  5'- gGCCuGCCGGUGUgguugacguaCUGCCGgG-CCGCgCGg -3'
miRNA:   3'- -CGG-CGGCCACG----------GAUGGCgCaGGUG-GC- -5'
23349 5' -62.2 NC_005259.1 + 42201 0.74 0.146983
Target:  5'- cGCCGUCGcGauggaUGCCcGCCGCG-CCGCCGu -3'
miRNA:   3'- -CGGCGGC-C-----ACGGaUGGCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 43253 0.72 0.193792
Target:  5'- uGCCGCCcgcgccgGGUGCCUgagaguugACCGCagcgcccgCCGCCGa -3'
miRNA:   3'- -CGGCGG-------CCACGGA--------UGGCGca------GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 43685 0.73 0.162828
Target:  5'- cGCCGCCGGUGgcgaaCCUcuugaaACCGCG-CgACCGc -3'
miRNA:   3'- -CGGCGGCCAC-----GGA------UGGCGCaGgUGGC- -5'
23349 5' -62.2 NC_005259.1 + 44623 0.68 0.359733
Target:  5'- uGCCGCCguaGGUugcGCCUugACCG-GUgCCGCCGc -3'
miRNA:   3'- -CGGCGG---CCA---CGGA--UGGCgCA-GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 45004 0.71 0.209314
Target:  5'- aCCGCCGaccGCCgggGCCGCG-CCGCCc -3'
miRNA:   3'- cGGCGGCca-CGGa--UGGCGCaGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 45324 0.7 0.260525
Target:  5'- cGCCGCCGaacugcgugGCCUgcGCCGCcugggCCGCCGc -3'
miRNA:   3'- -CGGCGGCca-------CGGA--UGGCGca---GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 45489 0.76 0.09424
Target:  5'- gGCCGCUGGUgGCCUuggucGCUGUGgCCACCGc -3'
miRNA:   3'- -CGGCGGCCA-CGGA-----UGGCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 45641 0.79 0.061403
Target:  5'- aGCgCGCCGGUGCC-GCCGUGaacaCCGCCGu -3'
miRNA:   3'- -CG-GCGGCCACGGaUGGCGCa---GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 45775 0.69 0.300056
Target:  5'- cUCGCCGGgUGCCagcACCGCGUUgACgGu -3'
miRNA:   3'- cGGCGGCC-ACGGa--UGGCGCAGgUGgC- -5'
23349 5' -62.2 NC_005259.1 + 46786 0.7 0.259284
Target:  5'- cCCGCCGGgccgaacaccgaGCCUGCgaGCGcaCCACCGg -3'
miRNA:   3'- cGGCGGCCa-----------CGGAUGg-CGCa-GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 46862 0.68 0.328896
Target:  5'- cGCUGUCGGUcgagGCUUgaAUCGCG-CCGCCGc -3'
miRNA:   3'- -CGGCGGCCA----CGGA--UGGCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 46927 0.81 0.045566
Target:  5'- cGCCGCCGaGcuUGCCcGCCGCG-CCGCCGa -3'
miRNA:   3'- -CGGCGGC-C--ACGGaUGGCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 47943 0.71 0.219888
Target:  5'- aGCCGaugacggCGGUGCCgauggccGCCGCG-CCGCCc -3'
miRNA:   3'- -CGGCg------GCCACGGa------UGGCGCaGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.