miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23349 5' -62.2 NC_005259.1 + 22612 0.67 0.413123
Target:  5'- cGCCGCCGaccGCCgcccgaucaucuucGCCGCGUCggucgaCGCCGc -3'
miRNA:   3'- -CGGCGGCca-CGGa-------------UGGCGCAG------GUGGC- -5'
23349 5' -62.2 NC_005259.1 + 23893 0.75 0.125842
Target:  5'- uGCCGCCcGaGCC-GCCGCGcCCGCCGu -3'
miRNA:   3'- -CGGCGGcCaCGGaUGGCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 25944 0.72 0.175704
Target:  5'- cGCaCGCCGGUGCCcggcccGCCGaCG-CCugCGa -3'
miRNA:   3'- -CG-GCGGCCACGGa-----UGGC-GCaGGugGC- -5'
23349 5' -62.2 NC_005259.1 + 26048 0.77 0.080328
Target:  5'- cGCCGCCGGguugGCCaUGCCGCcgccgagcaGUCCcCCGa -3'
miRNA:   3'- -CGGCGGCCa---CGG-AUGGCG---------CAGGuGGC- -5'
23349 5' -62.2 NC_005259.1 + 26122 0.8 0.052199
Target:  5'- cGCCGCCGGUcGCCgguCCGaCG-CCGCCGa -3'
miRNA:   3'- -CGGCGGCCA-CGGau-GGC-GCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 26776 0.85 0.022965
Target:  5'- uGCCGCCGGUGCCUcggaacACCaGCG-CCGCCGc -3'
miRNA:   3'- -CGGCGGCCACGGA------UGG-CGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 28016 0.68 0.328896
Target:  5'- gGUCGCCGG-GgUUGCgCGCGUUgGCCa -3'
miRNA:   3'- -CGGCGGCCaCgGAUG-GCGCAGgUGGc -5'
23349 5' -62.2 NC_005259.1 + 28636 0.75 0.110414
Target:  5'- gGCCaCCGGUGCCgacACCGCcgaggCCGCCGu -3'
miRNA:   3'- -CGGcGGCCACGGa--UGGCGca---GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 28768 0.72 0.175704
Target:  5'- cGUCGCCGGUGCCga-CGagGUacCCGCCGg -3'
miRNA:   3'- -CGGCGGCCACGGaugGCg-CA--GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 28965 0.75 0.125842
Target:  5'- cGCCGagguCGGUGCCgagGCCGCGagCGCCc -3'
miRNA:   3'- -CGGCg---GCCACGGa--UGGCGCagGUGGc -5'
23349 5' -62.2 NC_005259.1 + 30202 0.73 0.158729
Target:  5'- cCCGUCGGUGCCcGCCGCGagagaaUCACCc -3'
miRNA:   3'- cGGCGGCCACGGaUGGCGCa-----GGUGGc -5'
23349 5' -62.2 NC_005259.1 + 30770 0.69 0.286385
Target:  5'- -aCGCCGGUggcaccgcuGCCguuguUCGCGUaCCGCCGg -3'
miRNA:   3'- cgGCGGCCA---------CGGau---GGCGCA-GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 33388 0.71 0.225344
Target:  5'- uCCGCCGaGcGCgacgaGCCGUGUCCACCGc -3'
miRNA:   3'- cGGCGGC-CaCGga---UGGCGCAGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 33552 0.72 0.204193
Target:  5'- cGUCGCCGGUcaggaagaaccGCCcgaacuugACCGCGUcgcgggCCACCGa -3'
miRNA:   3'- -CGGCGGCCA-----------CGGa-------UGGCGCA------GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 34231 0.68 0.347159
Target:  5'- cGCUGCCGGUcuuGCCguugaaCGUGUCCgacacaucgggcucaGCCGg -3'
miRNA:   3'- -CGGCGGCCA---CGGaug---GCGCAGG---------------UGGC- -5'
23349 5' -62.2 NC_005259.1 + 35068 0.67 0.40103
Target:  5'- cGCCGCCcuugcugacGGUgGCCUG-CGCaGUCCACa- -3'
miRNA:   3'- -CGGCGG---------CCA-CGGAUgGCG-CAGGUGgc -5'
23349 5' -62.2 NC_005259.1 + 35521 0.72 0.194277
Target:  5'- cGCCGCCGGgcacaccGCCcGCCGuCGccgaUCCGCCc -3'
miRNA:   3'- -CGGCGGCCa------CGGaUGGC-GC----AGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 35843 0.76 0.096771
Target:  5'- aCCGCCcgcgagcacaGGUccGCC-GCCGCGUCCACCGc -3'
miRNA:   3'- cGGCGG----------CCA--CGGaUGGCGCAGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 36441 0.66 0.427214
Target:  5'- cGUCGCCGaG-GUCgACCGCGUCgagggugagCACCGc -3'
miRNA:   3'- -CGGCGGC-CaCGGaUGGCGCAG---------GUGGC- -5'
23349 5' -62.2 NC_005259.1 + 36677 0.73 0.154722
Target:  5'- cGCCGCCGGgGUCUugACCGUccucGcCCGCCGa -3'
miRNA:   3'- -CGGCGGCCaCGGA--UGGCG----CaGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.