Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23349 | 5' | -62.2 | NC_005259.1 | + | 37663 | 0.72 | 0.17974 |
Target: 5'- cGCCGCCGGUGCC-GCCacgguugguguauGUGcCCgcGCCGg -3' miRNA: 3'- -CGGCGGCCACGGaUGG-------------CGCaGG--UGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 2145 | 0.72 | 0.184785 |
Target: 5'- cCCGCaCGGUGCUgGCCaGCGgcgucgagCCGCCGg -3' miRNA: 3'- cGGCG-GCCACGGaUGG-CGCa-------GGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 56133 | 0.72 | 0.189479 |
Target: 5'- cGCUGCCGGUGUaaACCuGCGUCCGg-- -3' miRNA: 3'- -CGGCGGCCACGgaUGG-CGCAGGUggc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 43253 | 0.72 | 0.193792 |
Target: 5'- uGCCGCCcgcgccgGGUGCCUgagaguugACCGCagcgcccgCCGCCGa -3' miRNA: 3'- -CGGCGG-------CCACGGA--------UGGCGca------GGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 35521 | 0.72 | 0.194277 |
Target: 5'- cGCCGCCGGgcacaccGCCcGCCGuCGccgaUCCGCCc -3' miRNA: 3'- -CGGCGGCCa------CGGaUGGC-GC----AGGUGGc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 9532 | 0.72 | 0.203687 |
Target: 5'- cGCCGCCGGgucaccggagagcUGCCcggccucgACCGCGUCgGCg- -3' miRNA: 3'- -CGGCGGCC-------------ACGGa-------UGGCGCAGgUGgc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 33552 | 0.72 | 0.204193 |
Target: 5'- cGUCGCCGGUcaggaagaaccGCCcgaacuugACCGCGUcgcgggCCACCGa -3' miRNA: 3'- -CGGCGGCCA-----------CGGa-------UGGCGCA------GGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 13464 | 0.71 | 0.209314 |
Target: 5'- cGgCGCUGGUGCUcACCGCG-CUGCCc -3' miRNA: 3'- -CgGCGGCCACGGaUGGCGCaGGUGGc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 45004 | 0.71 | 0.209314 |
Target: 5'- aCCGCCGaccGCCgggGCCGCG-CCGCCc -3' miRNA: 3'- cGGCGGCca-CGGa--UGGCGCaGGUGGc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 47943 | 0.71 | 0.219888 |
Target: 5'- aGCCGaugacggCGGUGCCgauggccGCCGCG-CCGCCc -3' miRNA: 3'- -CGGCg------GCCACGGa------UGGCGCaGGUGGc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 5196 | 0.71 | 0.219888 |
Target: 5'- cGCCGCCGccaaGCUcACCGCGcUCGCCGa -3' miRNA: 3'- -CGGCGGCca--CGGaUGGCGCaGGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 33388 | 0.71 | 0.225344 |
Target: 5'- uCCGCCGaGcGCgacgaGCCGUGUCCACCGc -3' miRNA: 3'- cGGCGGC-CaCGga---UGGCGCAGGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 18464 | 0.71 | 0.230915 |
Target: 5'- aCCGCCGGU-CCUgaGCCGUGcCCgacGCCGa -3' miRNA: 3'- cGGCGGCCAcGGA--UGGCGCaGG---UGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 37222 | 0.71 | 0.236601 |
Target: 5'- cGCCGCCGGggcgcugGCCcgUGCCGgauUGgcugCCGCCGu -3' miRNA: 3'- -CGGCGGCCa------CGG--AUGGC---GCa---GGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 51581 | 0.7 | 0.254365 |
Target: 5'- gGCaGCCGGUGCCgacacaGCCGCacgugagCCACCc -3' miRNA: 3'- -CGgCGGCCACGGa-----UGGCGca-----GGUGGc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 46786 | 0.7 | 0.259284 |
Target: 5'- cCCGCCGGgccgaacaccgaGCCUGCgaGCGcaCCACCGg -3' miRNA: 3'- cGGCGGCCa-----------CGGAUGg-CGCa-GGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 1847 | 0.7 | 0.260525 |
Target: 5'- uGCCGCCGaGgccgagaaaGCCgccGCCGCGUuccguaagcaggCCGCCGa -3' miRNA: 3'- -CGGCGGC-Ca--------CGGa--UGGCGCA------------GGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 53625 | 0.7 | 0.260525 |
Target: 5'- cGUCGagCGGUGCCguugGCCGCuUCCugCa -3' miRNA: 3'- -CGGCg-GCCACGGa---UGGCGcAGGugGc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 45324 | 0.7 | 0.260525 |
Target: 5'- cGCCGCCGaacugcgugGCCUgcGCCGCcugggCCGCCGc -3' miRNA: 3'- -CGGCGGCca-------CGGA--UGGCGca---GGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 66190 | 0.7 | 0.266807 |
Target: 5'- cGCUGCCGGUGCagUACgggucaggCGCGgUCgCGCCGa -3' miRNA: 3'- -CGGCGGCCACGg-AUG--------GCGC-AG-GUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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