miRNA display CGI


Results 21 - 40 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23349 5' -62.2 NC_005259.1 + 57648 0.67 0.375891
Target:  5'- cCCGCCGGguacagcaGCaCgucgACCGUGUCCGgCCa -3'
miRNA:   3'- cGGCGGCCa-------CG-Ga---UGGCGCAGGU-GGc -5'
23349 5' -62.2 NC_005259.1 + 48915 0.67 0.374253
Target:  5'- aGCUGCUGG-GCCUgACCGaCGccacgcacaaggCCACCGu -3'
miRNA:   3'- -CGGCGGCCaCGGA-UGGC-GCa-----------GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 38926 0.68 0.367751
Target:  5'- aGCaCGUCGGUGUUgcugugcccggUGCCGCuG-CCGCCGa -3'
miRNA:   3'- -CG-GCGGCCACGG-----------AUGGCG-CaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 44623 0.68 0.359733
Target:  5'- uGCCGCCguaGGUugcGCCUugACCG-GUgCCGCCGc -3'
miRNA:   3'- -CGGCGG---CCA---CGGA--UGGCgCA-GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 34231 0.68 0.347159
Target:  5'- cGCUGCCGGUcuuGCCguugaaCGUGUCCgacacaucgggcucaGCCGg -3'
miRNA:   3'- -CGGCGGCCA---CGGaug---GCGCAGG---------------UGGC- -5'
23349 5' -62.2 NC_005259.1 + 53271 0.68 0.336418
Target:  5'- uGUCGCCGGUGCC-GCCaaGaUCgACCu -3'
miRNA:   3'- -CGGCGGCCACGGaUGGcgC-AGgUGGc -5'
23349 5' -62.2 NC_005259.1 + 46862 0.68 0.328896
Target:  5'- cGCUGUCGGUcgagGCUUgaAUCGCG-CCGCCGc -3'
miRNA:   3'- -CGGCGGCCA----CGGA--UGGCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 28016 0.68 0.328896
Target:  5'- gGUCGCCGG-GgUUGCgCGCGUUgGCCa -3'
miRNA:   3'- -CGGCGGCCaCgGAUG-GCGCAGgUGGc -5'
23349 5' -62.2 NC_005259.1 + 36719 0.68 0.321498
Target:  5'- uGCCGCuCGa--CCcGCCGCGcCCGCCGg -3'
miRNA:   3'- -CGGCG-GCcacGGaUGGCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 40451 0.69 0.314225
Target:  5'- gGCCuGCCGGUGUgguugacguaCUGCCGgG-CCGCgCGg -3'
miRNA:   3'- -CGG-CGGCCACG----------GAUGGCgCaGGUG-GC- -5'
23349 5' -62.2 NC_005259.1 + 61439 0.69 0.307078
Target:  5'- gGCgCGCCGGUcgaucucauCCUGCUGCGaUCCuuGCCGa -3'
miRNA:   3'- -CG-GCGGCCAc--------GGAUGGCGC-AGG--UGGC- -5'
23349 5' -62.2 NC_005259.1 + 19848 0.69 0.307078
Target:  5'- uGCCGCgcuCGGUGUggcGCuCGCGcCCGCCGg -3'
miRNA:   3'- -CGGCG---GCCACGga-UG-GCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 48396 0.69 0.307078
Target:  5'- uGCCGCCGacgcccGCCgucgagucACCGCGaCCGCCa -3'
miRNA:   3'- -CGGCGGCca----CGGa-------UGGCGCaGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 50410 0.69 0.30285
Target:  5'- aGCgCGCCGGUGCCUugACCggcucgggcagcgguGCGggcucggggUCGCCGg -3'
miRNA:   3'- -CG-GCGGCCACGGA--UGG---------------CGCa--------GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 66058 0.69 0.300056
Target:  5'- cGCCGCCGuGgGCCUGCUGUagCCACa- -3'
miRNA:   3'- -CGGCGGC-CaCGGAUGGCGcaGGUGgc -5'
23349 5' -62.2 NC_005259.1 + 45775 0.69 0.300056
Target:  5'- cUCGCCGGgUGCCagcACCGCGUUgACgGu -3'
miRNA:   3'- cGGCGGCC-ACGGa--UGGCGCAGgUGgC- -5'
23349 5' -62.2 NC_005259.1 + 30770 0.69 0.286385
Target:  5'- -aCGCCGGUggcaccgcuGCCguuguUCGCGUaCCGCCGg -3'
miRNA:   3'- cgGCGGCCA---------CGGau---GGCGCA-GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 15998 0.69 0.286385
Target:  5'- aCCGCCGGUG---GCCGCaUCCuGCCGg -3'
miRNA:   3'- cGGCGGCCACggaUGGCGcAGG-UGGC- -5'
23349 5' -62.2 NC_005259.1 + 1348 0.69 0.286385
Target:  5'- -gCGCaaCGGUGCCUacugggccgcucGCCGCG-CCGCCc -3'
miRNA:   3'- cgGCG--GCCACGGA------------UGGCGCaGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 6466 0.69 0.279736
Target:  5'- cGUCGCCGGUGCCcugUACC-CGcUCACgCGg -3'
miRNA:   3'- -CGGCGGCCACGG---AUGGcGCaGGUG-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.