miRNA display CGI


Results 41 - 60 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23349 5' -62.2 NC_005259.1 + 66190 0.7 0.266807
Target:  5'- cGCUGCCGGUGCagUACgggucaggCGCGgUCgCGCCGa -3'
miRNA:   3'- -CGGCGGCCACGg-AUG--------GCGC-AG-GUGGC- -5'
23349 5' -62.2 NC_005259.1 + 1847 0.7 0.260525
Target:  5'- uGCCGCCGaGgccgagaaaGCCgccGCCGCGUuccguaagcaggCCGCCGa -3'
miRNA:   3'- -CGGCGGC-Ca--------CGGa--UGGCGCA------------GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 45324 0.7 0.260525
Target:  5'- cGCCGCCGaacugcgugGCCUgcGCCGCcugggCCGCCGc -3'
miRNA:   3'- -CGGCGGCca-------CGGA--UGGCGca---GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 53625 0.7 0.260525
Target:  5'- cGUCGagCGGUGCCguugGCCGCuUCCugCa -3'
miRNA:   3'- -CGGCg-GCCACGGa---UGGCGcAGGugGc -5'
23349 5' -62.2 NC_005259.1 + 46786 0.7 0.259284
Target:  5'- cCCGCCGGgccgaacaccgaGCCUGCgaGCGcaCCACCGg -3'
miRNA:   3'- cGGCGGCCa-----------CGGAUGg-CGCa-GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 51581 0.7 0.254365
Target:  5'- gGCaGCCGGUGCCgacacaGCCGCacgugagCCACCc -3'
miRNA:   3'- -CGgCGGCCACGGa-----UGGCGca-----GGUGGc -5'
23349 5' -62.2 NC_005259.1 + 37222 0.71 0.236601
Target:  5'- cGCCGCCGGggcgcugGCCcgUGCCGgauUGgcugCCGCCGu -3'
miRNA:   3'- -CGGCGGCCa------CGG--AUGGC---GCa---GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 18464 0.71 0.230915
Target:  5'- aCCGCCGGU-CCUgaGCCGUGcCCgacGCCGa -3'
miRNA:   3'- cGGCGGCCAcGGA--UGGCGCaGG---UGGC- -5'
23349 5' -62.2 NC_005259.1 + 33388 0.71 0.225344
Target:  5'- uCCGCCGaGcGCgacgaGCCGUGUCCACCGc -3'
miRNA:   3'- cGGCGGC-CaCGga---UGGCGCAGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 47943 0.71 0.219888
Target:  5'- aGCCGaugacggCGGUGCCgauggccGCCGCG-CCGCCc -3'
miRNA:   3'- -CGGCg------GCCACGGa------UGGCGCaGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 5196 0.71 0.219888
Target:  5'- cGCCGCCGccaaGCUcACCGCGcUCGCCGa -3'
miRNA:   3'- -CGGCGGCca--CGGaUGGCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 45004 0.71 0.209314
Target:  5'- aCCGCCGaccGCCgggGCCGCG-CCGCCc -3'
miRNA:   3'- cGGCGGCca-CGGa--UGGCGCaGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 13464 0.71 0.209314
Target:  5'- cGgCGCUGGUGCUcACCGCG-CUGCCc -3'
miRNA:   3'- -CgGCGGCCACGGaUGGCGCaGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 33552 0.72 0.204193
Target:  5'- cGUCGCCGGUcaggaagaaccGCCcgaacuugACCGCGUcgcgggCCACCGa -3'
miRNA:   3'- -CGGCGGCCA-----------CGGa-------UGGCGCA------GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 9532 0.72 0.203687
Target:  5'- cGCCGCCGGgucaccggagagcUGCCcggccucgACCGCGUCgGCg- -3'
miRNA:   3'- -CGGCGGCC-------------ACGGa-------UGGCGCAGgUGgc -5'
23349 5' -62.2 NC_005259.1 + 35521 0.72 0.194277
Target:  5'- cGCCGCCGGgcacaccGCCcGCCGuCGccgaUCCGCCc -3'
miRNA:   3'- -CGGCGGCCa------CGGaUGGC-GC----AGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 43253 0.72 0.193792
Target:  5'- uGCCGCCcgcgccgGGUGCCUgagaguugACCGCagcgcccgCCGCCGa -3'
miRNA:   3'- -CGGCGG-------CCACGGA--------UGGCGca------GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 56133 0.72 0.189479
Target:  5'- cGCUGCCGGUGUaaACCuGCGUCCGg-- -3'
miRNA:   3'- -CGGCGGCCACGgaUGG-CGCAGGUggc -5'
23349 5' -62.2 NC_005259.1 + 2145 0.72 0.184785
Target:  5'- cCCGCaCGGUGCUgGCCaGCGgcgucgagCCGCCGg -3'
miRNA:   3'- cGGCG-GCCACGGaUGG-CGCa-------GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 37663 0.72 0.17974
Target:  5'- cGCCGCCGGUGCC-GCCacgguugguguauGUGcCCgcGCCGg -3'
miRNA:   3'- -CGGCGGCCACGGaUGG-------------CGCaGG--UGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.