miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23349 5' -62.2 NC_005259.1 + 751 1.09 0.000336
Target:  5'- cGCCGCCGGUGCCUACCGCGUCCACCGc -3'
miRNA:   3'- -CGGCGGCCACGGAUGGCGCAGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 1348 0.69 0.286385
Target:  5'- -gCGCaaCGGUGCCUacugggccgcucGCCGCG-CCGCCc -3'
miRNA:   3'- cgGCG--GCCACGGA------------UGGCGCaGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 1847 0.7 0.260525
Target:  5'- uGCCGCCGaGgccgagaaaGCCgccGCCGCGUuccguaagcaggCCGCCGa -3'
miRNA:   3'- -CGGCGGC-Ca--------CGGa--UGGCGCA------------GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 2145 0.72 0.184785
Target:  5'- cCCGCaCGGUGCUgGCCaGCGgcgucgagCCGCCGg -3'
miRNA:   3'- cGGCG-GCCACGGaUGG-CGCa-------GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 3295 0.66 0.454385
Target:  5'- cUCGCCGGUcCCUcggcgagcGCUGCGUCgacgugagCGCCGg -3'
miRNA:   3'- cGGCGGCCAcGGA--------UGGCGCAG--------GUGGC- -5'
23349 5' -62.2 NC_005259.1 + 5196 0.71 0.219888
Target:  5'- cGCCGCCGccaaGCUcACCGCGcUCGCCGa -3'
miRNA:   3'- -CGGCGGCca--CGGaUGGCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 6466 0.69 0.279736
Target:  5'- cGUCGCCGGUGCCcugUACC-CGcUCACgCGg -3'
miRNA:   3'- -CGGCGGCCACGG---AUGGcGCaGGUG-GC- -5'
23349 5' -62.2 NC_005259.1 + 9532 0.72 0.203687
Target:  5'- cGCCGCCGGgucaccggagagcUGCCcggccucgACCGCGUCgGCg- -3'
miRNA:   3'- -CGGCGGCC-------------ACGGa-------UGGCGCAGgUGgc -5'
23349 5' -62.2 NC_005259.1 + 11455 0.77 0.084732
Target:  5'- uGCCGCCGGUGCCUAUCGUcUCgCAgaUCGa -3'
miRNA:   3'- -CGGCGGCCACGGAUGGCGcAG-GU--GGC- -5'
23349 5' -62.2 NC_005259.1 + 13429 0.66 0.454385
Target:  5'- cGCCGCCGGgGCCgcGCUagGCGUgaCCGUCGg -3'
miRNA:   3'- -CGGCGGCCaCGGa-UGG--CGCA--GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 13464 0.71 0.209314
Target:  5'- cGgCGCUGGUGCUcACCGCG-CUGCCc -3'
miRNA:   3'- -CgGCGGCCACGGaUGGCGCaGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 14329 0.67 0.409644
Target:  5'- cGCCGCCGcccgcGUGCggGCCGCcgaCGCCa -3'
miRNA:   3'- -CGGCGGC-----CACGgaUGGCGcagGUGGc -5'
23349 5' -62.2 NC_005259.1 + 14495 0.66 0.445223
Target:  5'- cGCUGCuCGGUGCCcGCaUGCa--CACCGg -3'
miRNA:   3'- -CGGCG-GCCACGGaUG-GCGcagGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 15542 0.66 0.472069
Target:  5'- cGCCgucacugGCCGGUGCC-ACCcucagGUGgCCACCc -3'
miRNA:   3'- -CGG-------CGGCCACGGaUGG-----CGCaGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 15998 0.69 0.286385
Target:  5'- aCCGCCGGUG---GCCGCaUCCuGCCGg -3'
miRNA:   3'- cGGCGGCCACggaUGGCGcAGG-UGGC- -5'
23349 5' -62.2 NC_005259.1 + 17762 0.67 0.418373
Target:  5'- gGCCGCCGcGcGCCggGCCGag-CgCACCGa -3'
miRNA:   3'- -CGGCGGC-CaCGGa-UGGCgcaG-GUGGC- -5'
23349 5' -62.2 NC_005259.1 + 18464 0.71 0.230915
Target:  5'- aCCGCCGGU-CCUgaGCCGUGcCCgacGCCGa -3'
miRNA:   3'- cGGCGGCCAcGGA--UGGCGCaGG---UGGC- -5'
23349 5' -62.2 NC_005259.1 + 18851 0.66 0.47301
Target:  5'- cUCGCCGGUGCCgugcaacgguUGCgCGCGUgggaggCCAaCCa -3'
miRNA:   3'- cGGCGGCCACGG----------AUG-GCGCA------GGU-GGc -5'
23349 5' -62.2 NC_005259.1 + 19848 0.69 0.307078
Target:  5'- uGCCGCgcuCGGUGUggcGCuCGCGcCCGCCGg -3'
miRNA:   3'- -CGGCG---GCCACGga-UG-GCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 20152 0.79 0.061403
Target:  5'- gGCaGCCGGUGCCcuggccACCGCGcCCGCCGc -3'
miRNA:   3'- -CGgCGGCCACGGa-----UGGCGCaGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.