miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23349 5' -62.2 NC_005259.1 + 18851 0.66 0.47301
Target:  5'- cUCGCCGGUGCCgugcaacgguUGCgCGCGUgggaggCCAaCCa -3'
miRNA:   3'- cGGCGGCCACGG----------AUG-GCGCA------GGU-GGc -5'
23349 5' -62.2 NC_005259.1 + 28965 0.75 0.125842
Target:  5'- cGCCGagguCGGUGCCgagGCCGCGagCGCCc -3'
miRNA:   3'- -CGGCg---GCCACGGa--UGGCGCagGUGGc -5'
23349 5' -62.2 NC_005259.1 + 23893 0.75 0.125842
Target:  5'- uGCCGCCcGaGCC-GCCGCGcCCGCCGu -3'
miRNA:   3'- -CGGCGGcCaCGGaUGGCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 42201 0.74 0.146983
Target:  5'- cGCCGUCGcGauggaUGCCcGCCGCG-CCGCCGu -3'
miRNA:   3'- -CGGCGGC-C-----ACGGaUGGCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 36677 0.73 0.154722
Target:  5'- cGCCGCCGGgGUCUugACCGUccucGcCCGCCGa -3'
miRNA:   3'- -CGGCGGCCaCGGA--UGGCG----CaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 30202 0.73 0.158729
Target:  5'- cCCGUCGGUGCCcGCCGCGagagaaUCACCc -3'
miRNA:   3'- cGGCGGCCACGGaUGGCGCa-----GGUGGc -5'
23349 5' -62.2 NC_005259.1 + 43685 0.73 0.162828
Target:  5'- cGCCGCCGGUGgcgaaCCUcuugaaACCGCG-CgACCGc -3'
miRNA:   3'- -CGGCGGCCAC-----GGA------UGGCGCaGgUGGC- -5'
23349 5' -62.2 NC_005259.1 + 25944 0.72 0.175704
Target:  5'- cGCaCGCCGGUGCCcggcccGCCGaCG-CCugCGa -3'
miRNA:   3'- -CG-GCGGCCACGGa-----UGGC-GCaGGugGC- -5'
23349 5' -62.2 NC_005259.1 + 28768 0.72 0.175704
Target:  5'- cGUCGCCGGUGCCga-CGagGUacCCGCCGg -3'
miRNA:   3'- -CGGCGGCCACGGaugGCg-CA--GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 56094 0.75 0.11335
Target:  5'- uGCuCGUCGGgGCC-ACCGCGUggCCACCGa -3'
miRNA:   3'- -CG-GCGGCCaCGGaUGGCGCA--GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 28636 0.75 0.110414
Target:  5'- gGCCaCCGGUGCCgacACCGCcgaggCCGCCGu -3'
miRNA:   3'- -CGGcGGCCACGGa--UGGCGca---GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 35843 0.76 0.096771
Target:  5'- aCCGCCcgcgagcacaGGUccGCC-GCCGCGUCCACCGc -3'
miRNA:   3'- cGGCGG----------CCA--CGGaUGGCGCAGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 26776 0.85 0.022965
Target:  5'- uGCCGCCGGUGCCUcggaacACCaGCG-CCGCCGc -3'
miRNA:   3'- -CGGCGGCCACGGA------UGG-CGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 46927 0.81 0.045566
Target:  5'- cGCCGCCGaGcuUGCCcGCCGCG-CCGCCGa -3'
miRNA:   3'- -CGGCGGC-C--ACGGaUGGCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 26122 0.8 0.052199
Target:  5'- cGCCGCCGGUcGCCgguCCGaCG-CCGCCGa -3'
miRNA:   3'- -CGGCGGCCA-CGGau-GGC-GCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 20152 0.79 0.061403
Target:  5'- gGCaGCCGGUGCCcuggccACCGCGcCCGCCGc -3'
miRNA:   3'- -CGgCGGCCACGGa-----UGGCGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 45641 0.79 0.061403
Target:  5'- aGCgCGCCGGUGCC-GCCGUGaacaCCGCCGu -3'
miRNA:   3'- -CG-GCGGCCACGGaUGGCGCa---GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 26048 0.77 0.080328
Target:  5'- cGCCGCCGGguugGCCaUGCCGCcgccgagcaGUCCcCCGa -3'
miRNA:   3'- -CGGCGGCCa---CGG-AUGGCG---------CAGGuGGC- -5'
23349 5' -62.2 NC_005259.1 + 11455 0.77 0.084732
Target:  5'- uGCCGCCGGUGCCUAUCGUcUCgCAgaUCGa -3'
miRNA:   3'- -CGGCGGCCACGGAUGGCGcAG-GU--GGC- -5'
23349 5' -62.2 NC_005259.1 + 45489 0.76 0.09424
Target:  5'- gGCCGCUGGUgGCCUuggucGCUGUGgCCACCGc -3'
miRNA:   3'- -CGGCGGCCA-CGGA-----UGGCGCaGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.