miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23349 5' -62.2 NC_005259.1 + 67757 0.66 0.454385
Target:  5'- gGCCGCCccgGCC-ACCG-G-CCACCGa -3'
miRNA:   3'- -CGGCGGccaCGGaUGGCgCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 67178 0.66 0.427214
Target:  5'- uGCCGCCGaugaUGCCcGCCuCGUCUcccucGCCGc -3'
miRNA:   3'- -CGGCGGCc---ACGGaUGGcGCAGG-----UGGC- -5'
23349 5' -62.2 NC_005259.1 + 66190 0.7 0.266807
Target:  5'- cGCUGCCGGUGCagUACgggucaggCGCGgUCgCGCCGa -3'
miRNA:   3'- -CGGCGGCCACGg-AUG--------GCGC-AG-GUGGC- -5'
23349 5' -62.2 NC_005259.1 + 66058 0.69 0.300056
Target:  5'- cGCCGCCGuGgGCCUGCUGUagCCACa- -3'
miRNA:   3'- -CGGCGGC-CaCGGAUGGCGcaGGUGgc -5'
23349 5' -62.2 NC_005259.1 + 61439 0.69 0.307078
Target:  5'- gGCgCGCCGGUcgaucucauCCUGCUGCGaUCCuuGCCGa -3'
miRNA:   3'- -CG-GCGGCCAc--------GGAUGGCGC-AGG--UGGC- -5'
23349 5' -62.2 NC_005259.1 + 58442 0.67 0.392532
Target:  5'- cGCUGaUCGGUgGCCUuggugAUCGCGgCCACCa -3'
miRNA:   3'- -CGGC-GGCCA-CGGA-----UGGCGCaGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 57648 0.67 0.375891
Target:  5'- cCCGCCGGguacagcaGCaCgucgACCGUGUCCGgCCa -3'
miRNA:   3'- cGGCGGCCa-------CG-Ga---UGGCGCAGGU-GGc -5'
23349 5' -62.2 NC_005259.1 + 56133 0.72 0.189479
Target:  5'- cGCUGCCGGUGUaaACCuGCGUCCGg-- -3'
miRNA:   3'- -CGGCGGCCACGgaUGG-CGCAGGUggc -5'
23349 5' -62.2 NC_005259.1 + 56094 0.75 0.11335
Target:  5'- uGCuCGUCGGgGCC-ACCGCGUggCCACCGa -3'
miRNA:   3'- -CG-GCGGCCaCGGaUGGCGCA--GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 55694 0.67 0.409644
Target:  5'- cCCGUCGGcaGCCUcguugaugGCCGCGagCACCu -3'
miRNA:   3'- cGGCGGCCa-CGGA--------UGGCGCagGUGGc -5'
23349 5' -62.2 NC_005259.1 + 53740 0.66 0.463649
Target:  5'- uGUCGCCgGGUGUCcACUcgGUG-CCGCCGa -3'
miRNA:   3'- -CGGCGG-CCACGGaUGG--CGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 53625 0.7 0.260525
Target:  5'- cGUCGagCGGUGCCguugGCCGCuUCCugCa -3'
miRNA:   3'- -CGGCg-GCCACGGa---UGGCGcAGGugGc -5'
23349 5' -62.2 NC_005259.1 + 53326 0.67 0.400175
Target:  5'- cCUGCCGGUgGCCUcACCuacgauuacguucGCGcCCGCCu -3'
miRNA:   3'- cGGCGGCCA-CGGA-UGG-------------CGCaGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 53271 0.68 0.336418
Target:  5'- uGUCGCCGGUGCC-GCCaaGaUCgACCu -3'
miRNA:   3'- -CGGCGGCCACGGaUGGcgC-AGgUGGc -5'
23349 5' -62.2 NC_005259.1 + 52769 0.66 0.445223
Target:  5'- aGCuCGUCGGUGUCgGCaGCGUgUGCCGu -3'
miRNA:   3'- -CG-GCGGCCACGGaUGgCGCAgGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 51581 0.7 0.254365
Target:  5'- gGCaGCCGGUGCCgacacaGCCGCacgugagCCACCc -3'
miRNA:   3'- -CGgCGGCCACGGa-----UGGCGca-----GGUGGc -5'
23349 5' -62.2 NC_005259.1 + 50410 0.69 0.30285
Target:  5'- aGCgCGCCGGUGCCUugACCggcucgggcagcgguGCGggcucggggUCGCCGg -3'
miRNA:   3'- -CG-GCGGCCACGGA--UGG---------------CGCa--------GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 48915 0.67 0.374253
Target:  5'- aGCUGCUGG-GCCUgACCGaCGccacgcacaaggCCACCGu -3'
miRNA:   3'- -CGGCGGCCaCGGA-UGGC-GCa-----------GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 48396 0.69 0.307078
Target:  5'- uGCCGCCGacgcccGCCgucgagucACCGCGaCCGCCa -3'
miRNA:   3'- -CGGCGGCca----CGGa-------UGGCGCaGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 48183 0.66 0.427214
Target:  5'- cGCCGCCgGGUGUCggACCGgGcaUGCCGu -3'
miRNA:   3'- -CGGCGG-CCACGGa-UGGCgCagGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.