Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 8539 | 0.69 | 0.23688 |
Target: 5'- cGGCGaugagCuCGGCGGUGuaGCCcauGCGCCGCa -3' miRNA: 3'- -CUGCga---GcGCCGCCAC--CGG---UGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 18772 | 0.69 | 0.231207 |
Target: 5'- -cUGCcacaUCGCGgugggcaaGCGGUGGCagggACGCCGCa -3' miRNA: 3'- cuGCG----AGCGC--------CGCCACCGg---UGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 54023 | 0.69 | 0.225649 |
Target: 5'- cGACGCUCGgGcGCGGUgcGGUCuGCGaaGCa -3' miRNA: 3'- -CUGCGAGCgC-CGCCA--CCGG-UGCggCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 47946 | 0.69 | 0.225649 |
Target: 5'- cGAUGa---CGGCGGUGccgauggccGCCGCGCCGCc -3' miRNA: 3'- -CUGCgagcGCCGCCAC---------CGGUGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 46563 | 0.69 | 0.220205 |
Target: 5'- cGCGCcuauggUCGCGGCGucgaCCGCGCCGCc -3' miRNA: 3'- cUGCG------AGCGCCGCcaccGGUGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 14062 | 0.7 | 0.204542 |
Target: 5'- cGACGagaccagCaCGGCGGUGGCCuACGUgCGCa -3' miRNA: 3'- -CUGCga-----GcGCCGCCACCGG-UGCG-GCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 26046 | 0.7 | 0.199539 |
Target: 5'- aGCGC-CGCcG-GGuUGGCCAUGCCGCc -3' miRNA: 3'- cUGCGaGCGcCgCC-ACCGGUGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 46315 | 0.71 | 0.176099 |
Target: 5'- -uUGUUCGCGGCcccgagGGUCGCGUCGCg -3' miRNA: 3'- cuGCGAGCGCCGcca---CCGGUGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 66471 | 0.71 | 0.171715 |
Target: 5'- uGACGCUgGUGGCGGUGGUCuCGaUCa- -3' miRNA: 3'- -CUGCGAgCGCCGCCACCGGuGC-GGcg -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 23238 | 0.71 | 0.163239 |
Target: 5'- cGACGCcaaugccaccUCGUgGGCGGUGGCCAC-CaugaGCa -3' miRNA: 3'- -CUGCG----------AGCG-CCGCCACCGGUGcGg---CG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 51252 | 0.72 | 0.143676 |
Target: 5'- cACGCcgUUGCGGCucgcGGUGGUCACGgUGCg -3' miRNA: 3'- cUGCG--AGCGCCG----CCACCGGUGCgGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 41102 | 0.73 | 0.124325 |
Target: 5'- cGGCGgUCGgcgguaugacgauguCGGCGGUGcCCGCGUCGCg -3' miRNA: 3'- -CUGCgAGC---------------GCCGCCACcGGUGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 717 | 0.73 | 0.12304 |
Target: 5'- gGugGCaUCGCgagaaucacaccGGCGGUGcCUACGCCGCc -3' miRNA: 3'- -CugCG-AGCG------------CCGCCACcGGUGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 35663 | 0.73 | 0.12304 |
Target: 5'- gGugGCcagCGCGGUGGUGGUgcacagcgACGCCGUg -3' miRNA: 3'- -CugCGa--GCGCCGCCACCGg-------UGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 31243 | 0.73 | 0.116795 |
Target: 5'- -uUGggCGCGGCGGUGccGCCccacACGCCGCa -3' miRNA: 3'- cuGCgaGCGCCGCCAC--CGG----UGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 26404 | 0.73 | 0.113785 |
Target: 5'- cGACGCcgggCGCGGCGGUGccGCCGuagaacgcacCGCCGa -3' miRNA: 3'- -CUGCGa---GCGCCGCCAC--CGGU----------GCGGCg -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 19862 | 0.74 | 0.110847 |
Target: 5'- uGGCGCUCGCGcccgcCGGgaucGCCgACGCCGCg -3' miRNA: 3'- -CUGCGAGCGCc----GCCac--CGG-UGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 60245 | 0.74 | 0.110847 |
Target: 5'- cACGCUUGCGuGCGGgugcaaggcUGGCCaccaGCGCUGCc -3' miRNA: 3'- cUGCGAGCGC-CGCC---------ACCGG----UGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 10450 | 0.74 | 0.105184 |
Target: 5'- aGugGCUCGaCGGCGGUGuCCuGCGCaGCg -3' miRNA: 3'- -CugCGAGC-GCCGCCACcGG-UGCGgCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 67155 | 0.76 | 0.076544 |
Target: 5'- -cCGCUUGUcgauGGUGGcGGCCAUGCCGCc -3' miRNA: 3'- cuGCGAGCG----CCGCCaCCGGUGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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