miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23354 3' -63.8 NC_005259.1 + 26046 0.7 0.199539
Target:  5'- aGCGC-CGCcG-GGuUGGCCAUGCCGCc -3'
miRNA:   3'- cUGCGaGCGcCgCC-ACCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 26404 0.73 0.113785
Target:  5'- cGACGCcgggCGCGGCGGUGccGCCGuagaacgcacCGCCGa -3'
miRNA:   3'- -CUGCGa---GCGCCGCCAC--CGGU----------GCGGCg -5'
23354 3' -63.8 NC_005259.1 + 26994 0.67 0.307161
Target:  5'- aGACGUUCGaCGuuuCGGUcuugaacGCCGCGCCGUa -3'
miRNA:   3'- -CUGCGAGC-GCc--GCCAc------CGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 31243 0.73 0.116795
Target:  5'- -uUGggCGCGGCGGUGccGCCccacACGCCGCa -3'
miRNA:   3'- cuGCgaGCGCCGCCAC--CGG----UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 35598 0.67 0.328908
Target:  5'- --aGgUCGgGuGCGuccUGGCCACGCUGCg -3'
miRNA:   3'- cugCgAGCgC-CGCc--ACCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 35663 0.73 0.12304
Target:  5'- gGugGCcagCGCGGUGGUGGUgcacagcgACGCCGUg -3'
miRNA:   3'- -CugCGa--GCGCCGCCACCGg-------UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 37057 0.66 0.367628
Target:  5'- -cCGCccacgGCGGCGGUGuCCACGUccaCGCa -3'
miRNA:   3'- cuGCGag---CGCCGCCACcGGUGCG---GCG- -5'
23354 3' -63.8 NC_005259.1 + 38733 0.79 0.044661
Target:  5'- -cCGC-CGUaccGGCGGUGGCC-CGCCGCa -3'
miRNA:   3'- cuGCGaGCG---CCGCCACCGGuGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 39475 0.66 0.379017
Target:  5'- -cCGUcgUCGCGGUagcacGagauaucgagcuugaUGGCCGCGCCGCu -3'
miRNA:   3'- cuGCG--AGCGCCGc----C---------------ACCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 40120 0.66 0.367628
Target:  5'- uGCGCUCGUGGaauuGGcgGGCgAgcuCGCCGUc -3'
miRNA:   3'- cUGCGAGCGCCg---CCa-CCGgU---GCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 41102 0.73 0.124325
Target:  5'- cGGCGgUCGgcgguaugacgauguCGGCGGUGcCCGCGUCGCg -3'
miRNA:   3'- -CUGCgAGC---------------GCCGCCACcGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 42199 0.68 0.273394
Target:  5'- cGCGCcgUCGCGaUGGaUGcccGCCGCGCCGCc -3'
miRNA:   3'- cUGCG--AGCGCcGCC-AC---CGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 42246 0.66 0.383969
Target:  5'- cGACcacCUCGCGcugugaGGUGGUCACGUCGa -3'
miRNA:   3'- -CUGc--GAGCGCcg----CCACCGGUGCGGCg -5'
23354 3' -63.8 NC_005259.1 + 44796 0.78 0.049777
Target:  5'- aGACGCUCGC--CGGUGGCCugGCCc- -3'
miRNA:   3'- -CUGCGAGCGccGCCACCGGugCGGcg -5'
23354 3' -63.8 NC_005259.1 + 45005 0.66 0.359638
Target:  5'- -cCGC-CGacCGcCGG-GGCCGCGCCGCc -3'
miRNA:   3'- cuGCGaGC--GCcGCCaCCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 45312 0.67 0.314286
Target:  5'- uGACGC-CGaGGCcgccgccgaacuGcGUGGCCuGCGCCGCc -3'
miRNA:   3'- -CUGCGaGCgCCG------------C-CACCGG-UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 46315 0.71 0.176099
Target:  5'- -uUGUUCGCGGCcccgagGGUCGCGUCGCg -3'
miRNA:   3'- cuGCGAGCGCCGcca---CCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 46563 0.69 0.220205
Target:  5'- cGCGCcuauggUCGCGGCGucgaCCGCGCCGCc -3'
miRNA:   3'- cUGCG------AGCGCCGCcaccGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 46946 0.66 0.344026
Target:  5'- cGCGC-CGCcgaccGCGuugagcuuguUGGCCACGCCGCc -3'
miRNA:   3'- cUGCGaGCGc----CGCc---------ACCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 47946 0.69 0.225649
Target:  5'- cGAUGa---CGGCGGUGccgauggccGCCGCGCCGCc -3'
miRNA:   3'- -CUGCgagcGCCGCCAC---------CGGUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.