miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23354 3' -63.8 NC_005259.1 + 717 0.73 0.12304
Target:  5'- gGugGCaUCGCgagaaucacaccGGCGGUGcCUACGCCGCc -3'
miRNA:   3'- -CugCG-AGCG------------CCGCCACcGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 1554 0.68 0.286531
Target:  5'- cGCGUUCGgGGCGGUG---ACGCUGUg -3'
miRNA:   3'- cUGCGAGCgCCGCCACcggUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 6204 0.66 0.375739
Target:  5'- aGCGUgaGCGG-GGUGagccGCCGCGCCGa -3'
miRNA:   3'- cUGCGagCGCCgCCAC----CGGUGCGGCg -5'
23354 3' -63.8 NC_005259.1 + 7422 0.78 0.048446
Target:  5'- -uCGC-CGuCGGCGGUGcCCGCGCCGCa -3'
miRNA:   3'- cuGCGaGC-GCCGCCACcGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 7677 0.68 0.273394
Target:  5'- -cCGcCUCGUGG-GGUGGCCcguACGuCUGCa -3'
miRNA:   3'- cuGC-GAGCGCCgCCACCGG---UGC-GGCG- -5'
23354 3' -63.8 NC_005259.1 + 8539 0.69 0.23688
Target:  5'- cGGCGaugagCuCGGCGGUGuaGCCcauGCGCCGCa -3'
miRNA:   3'- -CUGCga---GcGCCGCCAC--CGG---UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 8931 0.66 0.375739
Target:  5'- --gGCUCGUuugucgaucaCGGUGGgCGCGCCGUg -3'
miRNA:   3'- cugCGAGCGcc--------GCCACCgGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 10450 0.74 0.105184
Target:  5'- aGugGCUCGaCGGCGGUGuCCuGCGCaGCg -3'
miRNA:   3'- -CugCGAGC-GCCGCCACcGG-UGCGgCG- -5'
23354 3' -63.8 NC_005259.1 + 10649 0.68 0.267009
Target:  5'- uGGC-CUCGCGGUcgagcgccuugaGGaUGGUCuGCGCCGCc -3'
miRNA:   3'- -CUGcGAGCGCCG------------CC-ACCGG-UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 11415 0.67 0.307161
Target:  5'- --gGCUCGUGGcCGGUGcaacggggauGCUugGgCCGCu -3'
miRNA:   3'- cugCGAGCGCC-GCCAC----------CGGugC-GGCG- -5'
23354 3' -63.8 NC_005259.1 + 12994 0.68 0.273394
Target:  5'- -gUGCUCGCGuucGCacucGGCUACGCCGCc -3'
miRNA:   3'- cuGCGAGCGC---CGcca-CCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 13447 0.68 0.279901
Target:  5'- aGGCGUgaccgucggCGCGGCGcUGGugcucaCCGCGCUGCc -3'
miRNA:   3'- -CUGCGa--------GCGCCGCcACC------GGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 14062 0.7 0.204542
Target:  5'- cGACGagaccagCaCGGCGGUGGCCuACGUgCGCa -3'
miRNA:   3'- -CUGCga-----GcGCCGCCACCGG-UGCG-GCG- -5'
23354 3' -63.8 NC_005259.1 + 14727 0.66 0.367628
Target:  5'- cGCGCUCGuCGccgagauguacGCGcUGGCCGgGCCGg -3'
miRNA:   3'- cUGCGAGC-GC-----------CGCcACCGGUgCGGCg -5'
23354 3' -63.8 NC_005259.1 + 16812 0.66 0.383969
Target:  5'- cGCGCUCGgGGcCGG-GGUCAUGauCCGa -3'
miRNA:   3'- cUGCGAGCgCC-GCCaCCGGUGC--GGCg -5'
23354 3' -63.8 NC_005259.1 + 18349 0.68 0.293284
Target:  5'- cGACGC-CGaCGGCGacauGUGGCaCAUGCC-Cg -3'
miRNA:   3'- -CUGCGaGC-GCCGC----CACCG-GUGCGGcG- -5'
23354 3' -63.8 NC_005259.1 + 18772 0.69 0.231207
Target:  5'- -cUGCcacaUCGCGgugggcaaGCGGUGGCagggACGCCGCa -3'
miRNA:   3'- cuGCG----AGCGC--------CGCCACCGg---UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 19862 0.74 0.110847
Target:  5'- uGGCGCUCGCGcccgcCGGgaucGCCgACGCCGCg -3'
miRNA:   3'- -CUGCGAGCGCc----GCCac--CGG-UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 20057 0.66 0.367628
Target:  5'- cGAUGUcCGCuGCGGUGGCggucgucacCACGUCGa -3'
miRNA:   3'- -CUGCGaGCGcCGCCACCG---------GUGCGGCg -5'
23354 3' -63.8 NC_005259.1 + 23238 0.71 0.163239
Target:  5'- cGACGCcaaugccaccUCGUgGGCGGUGGCCAC-CaugaGCa -3'
miRNA:   3'- -CUGCG----------AGCG-CCGCCACCGGUGcGg---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.