miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23354 3' -63.8 NC_005259.1 + 67973 0.8 0.037936
Target:  5'- cGCGCgcaGCGGC-GUGGCCAcCGCCGCg -3'
miRNA:   3'- cUGCGag-CGCCGcCACCGGU-GCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 67155 0.76 0.076544
Target:  5'- -cCGCUUGUcgauGGUGGcGGCCAUGCCGCc -3'
miRNA:   3'- cuGCGAGCG----CCGCCaCCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 66471 0.71 0.171715
Target:  5'- uGACGCUgGUGGCGGUGGUCuCGaUCa- -3'
miRNA:   3'- -CUGCGAgCGCCGCCACCGGuGC-GGcg -5'
23354 3' -63.8 NC_005259.1 + 66252 0.76 0.076544
Target:  5'- cGACGCagCGCGGCccgcgccgggcGGcGGCuCACGCCGCc -3'
miRNA:   3'- -CUGCGa-GCGCCG-----------CCaCCG-GUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 64759 0.69 0.242669
Target:  5'- cGCGcCUCGCGaCGGUgcgccucggcGGCC-CGCUGCg -3'
miRNA:   3'- cUGC-GAGCGCcGCCA----------CCGGuGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 63623 0.66 0.367628
Target:  5'- cGACGCcugauagaucaUCGUGGCGaGcugcucgcUGGCCgggACGCCGg -3'
miRNA:   3'- -CUGCG-----------AGCGCCGC-C--------ACCGG---UGCGGCg -5'
23354 3' -63.8 NC_005259.1 + 62920 0.67 0.307161
Target:  5'- uACGCUCGUccuCGGUuugcGGCuCGCGCUGCu -3'
miRNA:   3'- cUGCGAGCGcc-GCCA----CCG-GUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 62748 0.68 0.285863
Target:  5'- cGGCaGUaCGCGGUGGUacucgugGGCCggaACGUCGCg -3'
miRNA:   3'- -CUG-CGaGCGCCGCCA-------CCGG---UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 61359 0.66 0.344026
Target:  5'- -uCGCUCGgGGCGGUccaaCCACcuGCUGCc -3'
miRNA:   3'- cuGCGAGCgCCGCCAcc--GGUG--CGGCG- -5'
23354 3' -63.8 NC_005259.1 + 60671 0.66 0.359638
Target:  5'- uGACGCaCGCGuucugcaccgaGCGGUGGC-ACGCaccaaaGCa -3'
miRNA:   3'- -CUGCGaGCGC-----------CGCCACCGgUGCGg-----CG- -5'
23354 3' -63.8 NC_005259.1 + 60420 0.66 0.383969
Target:  5'- -cUGCUCGgGGguggcccaCGGggcGGCCACGCC-Cg -3'
miRNA:   3'- cuGCGAGCgCC--------GCCa--CCGGUGCGGcG- -5'
23354 3' -63.8 NC_005259.1 + 60245 0.74 0.110847
Target:  5'- cACGCUUGCGuGCGGgugcaaggcUGGCCaccaGCGCUGCc -3'
miRNA:   3'- cUGCGAGCGC-CGCC---------ACCGG----UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 58778 0.67 0.298775
Target:  5'- gGGCGCUgugCGCcggucgaGGCGGUgauugccucggcgGGCuCGCGCUGCu -3'
miRNA:   3'- -CUGCGA---GCG-------CCGCCA-------------CCG-GUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 58560 0.69 0.248576
Target:  5'- --gGCUCG-GGCGGUugGGCCGgauCGCgGCg -3'
miRNA:   3'- cugCGAGCgCCGCCA--CCGGU---GCGgCG- -5'
23354 3' -63.8 NC_005259.1 + 57459 0.68 0.260744
Target:  5'- cGACGCU-GCGGCaggccGGUGGCaccggaCACGUCGa -3'
miRNA:   3'- -CUGCGAgCGCCG-----CCACCG------GUGCGGCg -5'
23354 3' -63.8 NC_005259.1 + 57020 0.66 0.383969
Target:  5'- aGCGCggcucggCGCGGUGG-GGUCGCacucGUCGUa -3'
miRNA:   3'- cUGCGa------GCGCCGCCaCCGGUG----CGGCG- -5'
23354 3' -63.8 NC_005259.1 + 56798 0.67 0.328908
Target:  5'- cGAUGaacagaUCGgGGuCGGUGGCCACccauuGCgCGCc -3'
miRNA:   3'- -CUGCg-----AGCgCC-GCCACCGGUG-----CG-GCG- -5'
23354 3' -63.8 NC_005259.1 + 55329 0.68 0.293284
Target:  5'- gGugGUcuUgGCGGCagcGGUGGCgAUGCCGa -3'
miRNA:   3'- -CugCG--AgCGCCG---CCACCGgUGCGGCg -5'
23354 3' -63.8 NC_005259.1 + 55010 0.66 0.359638
Target:  5'- --gGCUCGCuuGGCGGUcgucucGGCaCGgGCUGCc -3'
miRNA:   3'- cugCGAGCG--CCGCCA------CCG-GUgCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 54023 0.69 0.225649
Target:  5'- cGACGCUCGgGcGCGGUgcGGUCuGCGaaGCa -3'
miRNA:   3'- -CUGCGAGCgC-CGCCA--CCGG-UGCggCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.