miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23354 3' -63.8 NC_005259.1 + 67973 0.8 0.037936
Target:  5'- cGCGCgcaGCGGC-GUGGCCAcCGCCGCg -3'
miRNA:   3'- cUGCGag-CGCCGcCACCGGU-GCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 38733 0.79 0.044661
Target:  5'- -cCGC-CGUaccGGCGGUGGCC-CGCCGCa -3'
miRNA:   3'- cuGCGaGCG---CCGCCACCGGuGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 7422 0.78 0.048446
Target:  5'- -uCGC-CGuCGGCGGUGcCCGCGCCGCa -3'
miRNA:   3'- cuGCGaGC-GCCGCCACcGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 44796 0.78 0.049777
Target:  5'- aGACGCUCGC--CGGUGGCCugGCCc- -3'
miRNA:   3'- -CUGCGAGCGccGCCACCGGugCGGcg -5'
23354 3' -63.8 NC_005259.1 + 67155 0.76 0.076544
Target:  5'- -cCGCUUGUcgauGGUGGcGGCCAUGCCGCc -3'
miRNA:   3'- cuGCGAGCG----CCGCCaCCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 66252 0.76 0.076544
Target:  5'- cGACGCagCGCGGCccgcgccgggcGGcGGCuCACGCCGCc -3'
miRNA:   3'- -CUGCGa-GCGCCG-----------CCaCCG-GUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 10450 0.74 0.105184
Target:  5'- aGugGCUCGaCGGCGGUGuCCuGCGCaGCg -3'
miRNA:   3'- -CugCGAGC-GCCGCCACcGG-UGCGgCG- -5'
23354 3' -63.8 NC_005259.1 + 19862 0.74 0.110847
Target:  5'- uGGCGCUCGCGcccgcCGGgaucGCCgACGCCGCg -3'
miRNA:   3'- -CUGCGAGCGCc----GCCac--CGG-UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 60245 0.74 0.110847
Target:  5'- cACGCUUGCGuGCGGgugcaaggcUGGCCaccaGCGCUGCc -3'
miRNA:   3'- cUGCGAGCGC-CGCC---------ACCGG----UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 26404 0.73 0.113785
Target:  5'- cGACGCcgggCGCGGCGGUGccGCCGuagaacgcacCGCCGa -3'
miRNA:   3'- -CUGCGa---GCGCCGCCAC--CGGU----------GCGGCg -5'
23354 3' -63.8 NC_005259.1 + 31243 0.73 0.116795
Target:  5'- -uUGggCGCGGCGGUGccGCCccacACGCCGCa -3'
miRNA:   3'- cuGCgaGCGCCGCCAC--CGG----UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 717 0.73 0.12304
Target:  5'- gGugGCaUCGCgagaaucacaccGGCGGUGcCUACGCCGCc -3'
miRNA:   3'- -CugCG-AGCG------------CCGCCACcGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 35663 0.73 0.12304
Target:  5'- gGugGCcagCGCGGUGGUGGUgcacagcgACGCCGUg -3'
miRNA:   3'- -CugCGa--GCGCCGCCACCGg-------UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 41102 0.73 0.124325
Target:  5'- cGGCGgUCGgcgguaugacgauguCGGCGGUGcCCGCGUCGCg -3'
miRNA:   3'- -CUGCgAGC---------------GCCGCCACcGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 51252 0.72 0.143676
Target:  5'- cACGCcgUUGCGGCucgcGGUGGUCACGgUGCg -3'
miRNA:   3'- cUGCG--AGCGCCG----CCACCGGUGCgGCG- -5'
23354 3' -63.8 NC_005259.1 + 23238 0.71 0.163239
Target:  5'- cGACGCcaaugccaccUCGUgGGCGGUGGCCAC-CaugaGCa -3'
miRNA:   3'- -CUGCG----------AGCG-CCGCCACCGGUGcGg---CG- -5'
23354 3' -63.8 NC_005259.1 + 66471 0.71 0.171715
Target:  5'- uGACGCUgGUGGCGGUGGUCuCGaUCa- -3'
miRNA:   3'- -CUGCGAgCGCCGCCACCGGuGC-GGcg -5'
23354 3' -63.8 NC_005259.1 + 46315 0.71 0.176099
Target:  5'- -uUGUUCGCGGCcccgagGGUCGCGUCGCg -3'
miRNA:   3'- cuGCGAGCGCCGcca---CCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 26046 0.7 0.199539
Target:  5'- aGCGC-CGCcG-GGuUGGCCAUGCCGCc -3'
miRNA:   3'- cUGCGaGCGcCgCC-ACCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 14062 0.7 0.204542
Target:  5'- cGACGagaccagCaCGGCGGUGGCCuACGUgCGCa -3'
miRNA:   3'- -CUGCga-----GcGCCGCCACCGG-UGCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.