miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23354 5' -54.5 NC_005259.1 + 7371 0.8 0.145496
Target:  5'- -gGCAGCACAACaCCucgggacaGACCCGCGAGAc -3'
miRNA:   3'- gaUGUCGUGUUG-GG--------CUGGGCGUUCUa -5'
23354 5' -54.5 NC_005259.1 + 42470 0.78 0.181164
Target:  5'- aCUACGGCGaGGCCCGGCCCGU-AGAg -3'
miRNA:   3'- -GAUGUCGUgUUGGGCUGGGCGuUCUa -5'
23354 5' -54.5 NC_005259.1 + 27407 0.75 0.290318
Target:  5'- -aGCGGCgGCAGCUCGguGCCCGCGAGGa -3'
miRNA:   3'- gaUGUCG-UGUUGGGC--UGGGCGUUCUa -5'
23354 5' -54.5 NC_005259.1 + 56265 0.72 0.415955
Target:  5'- cCUugAGCGCcgccGCCCGGCCCGUAu--- -3'
miRNA:   3'- -GAugUCGUGu---UGGGCUGGGCGUucua -5'
23354 5' -54.5 NC_005259.1 + 67530 0.72 0.44479
Target:  5'- -gGCGGCAaucACCUuGCCCGCGAGAUc -3'
miRNA:   3'- gaUGUCGUgu-UGGGcUGGGCGUUCUA- -5'
23354 5' -54.5 NC_005259.1 + 9080 0.72 0.454649
Target:  5'- -cACAGCAUAgGCCCGuuGCCCGcCGAGGg -3'
miRNA:   3'- gaUGUCGUGU-UGGGC--UGGGC-GUUCUa -5'
23354 5' -54.5 NC_005259.1 + 66242 0.7 0.546988
Target:  5'- gUGCAGCcaucgacGCAGCgCGGCCCGCGccGGGc -3'
miRNA:   3'- gAUGUCG-------UGUUGgGCUGGGCGU--UCUa -5'
23354 5' -54.5 NC_005259.1 + 22856 0.69 0.591576
Target:  5'- -cGCAGcCGCAACCUGuACUCGCA-GAUg -3'
miRNA:   3'- gaUGUC-GUGUUGGGC-UGGGCGUuCUA- -5'
23354 5' -54.5 NC_005259.1 + 29175 0.69 0.591576
Target:  5'- aCUACG--ACGACCCGaACCCGUggGGc -3'
miRNA:   3'- -GAUGUcgUGUUGGGC-UGGGCGuuCUa -5'
23354 5' -54.5 NC_005259.1 + 11082 0.69 0.613571
Target:  5'- -aGCcGUACGGCUCGACCuCGCAGGu- -3'
miRNA:   3'- gaUGuCGUGUUGGGCUGG-GCGUUCua -5'
23354 5' -54.5 NC_005259.1 + 44565 0.69 0.624597
Target:  5'- -gGCAGCGCG--CCGACCgGCAGGc- -3'
miRNA:   3'- gaUGUCGUGUugGGCUGGgCGUUCua -5'
23354 5' -54.5 NC_005259.1 + 57016 0.68 0.646661
Target:  5'- cCU-CAGCGCGGCUCGGCgCGguGGGg -3'
miRNA:   3'- -GAuGUCGUGUUGGGCUGgGCguUCUa -5'
23354 5' -54.5 NC_005259.1 + 25941 0.68 0.666474
Target:  5'- ---gAGCGCAcgccgguGCCCGGCCCGCcgacgccugcgauGAGAc -3'
miRNA:   3'- gaugUCGUGU-------UGGGCUGGGCG-------------UUCUa -5'
23354 5' -54.5 NC_005259.1 + 30191 0.68 0.66867
Target:  5'- -cACAGCACuacCCCGucgguGCCCGCcgcGAGAg -3'
miRNA:   3'- gaUGUCGUGuu-GGGC-----UGGGCG---UUCUa -5'
23354 5' -54.5 NC_005259.1 + 20544 0.68 0.66867
Target:  5'- -cGCAGCGugguggauCAGCaCCGACCC-CGAGAUc -3'
miRNA:   3'- gaUGUCGU--------GUUG-GGCUGGGcGUUCUA- -5'
23354 5' -54.5 NC_005259.1 + 66302 0.68 0.66867
Target:  5'- uCUGC-GCGCAugugcuGCCCGcagauguauCCCGCGAGAa -3'
miRNA:   3'- -GAUGuCGUGU------UGGGCu--------GGGCGUUCUa -5'
23354 5' -54.5 NC_005259.1 + 44733 0.68 0.690542
Target:  5'- -gGCAGCGCGcCCuCGACCgCGcCGAGGc -3'
miRNA:   3'- gaUGUCGUGUuGG-GCUGG-GC-GUUCUa -5'
23354 5' -54.5 NC_005259.1 + 3134 0.68 0.690542
Target:  5'- -gGCAGCggACGGCaCCG-CCCGUggGAc -3'
miRNA:   3'- gaUGUCG--UGUUG-GGCuGGGCGuuCUa -5'
23354 5' -54.5 NC_005259.1 + 19399 0.67 0.701398
Target:  5'- -gGCAGCGuCGACCCGA--UGCAGGGa -3'
miRNA:   3'- gaUGUCGU-GUUGGGCUggGCGUUCUa -5'
23354 5' -54.5 NC_005259.1 + 66919 0.67 0.712187
Target:  5'- -gGCAGCGCGcgguGCUCGACCggggugaGCGGGAc -3'
miRNA:   3'- gaUGUCGUGU----UGGGCUGGg------CGUUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.