Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23354 | 5' | -54.5 | NC_005259.1 | + | 3531 | 0.67 | 0.722896 |
Target: 5'- ---gGGCACGACaCCGACCacaGCcAGAUc -3' miRNA: 3'- gaugUCGUGUUG-GGCUGGg--CGuUCUA- -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 36718 | 0.67 | 0.744032 |
Target: 5'- gUGCcGCuCGACCCGccgcGCCCGcCGGGAUa -3' miRNA: 3'- gAUGuCGuGUUGGGC----UGGGC-GUUCUA- -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 29065 | 0.67 | 0.744032 |
Target: 5'- -cGCGGUAuCGGCCCGAUCUGCGc--- -3' miRNA: 3'- gaUGUCGU-GUUGGGCUGGGCGUucua -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 28942 | 0.67 | 0.744032 |
Target: 5'- -gGCGGCACGAUCCuGCgCCGCAu--- -3' miRNA: 3'- gaUGUCGUGUUGGGcUG-GGCGUucua -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 12551 | 0.66 | 0.754435 |
Target: 5'- -cACGGCAUuGCCggggUGGCCCGCcAGAUc -3' miRNA: 3'- gaUGUCGUGuUGG----GCUGGGCGuUCUA- -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 23664 | 0.66 | 0.764713 |
Target: 5'- -gACGGCugGACcgCCGACCCcgaGCAGGc- -3' miRNA: 3'- gaUGUCGugUUG--GGCUGGG---CGUUCua -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 7182 | 0.66 | 0.794679 |
Target: 5'- --cCGGCGaguGCCCGGCCUGC-GGAc -3' miRNA: 3'- gauGUCGUgu-UGGGCUGGGCGuUCUa -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 57702 | 0.66 | 0.804341 |
Target: 5'- uUGCcgGGCuu-GCCCGACUCGCGGGu- -3' miRNA: 3'- gAUG--UCGuguUGGGCUGGGCGUUCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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