Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23354 | 5' | -54.5 | NC_005259.1 | + | 66242 | 0.7 | 0.546988 |
Target: 5'- gUGCAGCcaucgacGCAGCgCGGCCCGCGccGGGc -3' miRNA: 3'- gAUGUCG-------UGUUGgGCUGGGCGU--UCUa -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 22856 | 0.69 | 0.591576 |
Target: 5'- -cGCAGcCGCAACCUGuACUCGCA-GAUg -3' miRNA: 3'- gaUGUC-GUGUUGGGC-UGGGCGUuCUA- -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 29175 | 0.69 | 0.591576 |
Target: 5'- aCUACG--ACGACCCGaACCCGUggGGc -3' miRNA: 3'- -GAUGUcgUGUUGGGC-UGGGCGuuCUa -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 11082 | 0.69 | 0.613571 |
Target: 5'- -aGCcGUACGGCUCGACCuCGCAGGu- -3' miRNA: 3'- gaUGuCGUGUUGGGCUGG-GCGUUCua -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 44565 | 0.69 | 0.624597 |
Target: 5'- -gGCAGCGCG--CCGACCgGCAGGc- -3' miRNA: 3'- gaUGUCGUGUugGGCUGGgCGUUCua -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 57016 | 0.68 | 0.646661 |
Target: 5'- cCU-CAGCGCGGCUCGGCgCGguGGGg -3' miRNA: 3'- -GAuGUCGUGUUGGGCUGgGCguUCUa -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 25941 | 0.68 | 0.666474 |
Target: 5'- ---gAGCGCAcgccgguGCCCGGCCCGCcgacgccugcgauGAGAc -3' miRNA: 3'- gaugUCGUGU-------UGGGCUGGGCG-------------UUCUa -5' |
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23354 | 5' | -54.5 | NC_005259.1 | + | 57702 | 0.66 | 0.804341 |
Target: 5'- uUGCcgGGCuu-GCCCGACUCGCGGGu- -3' miRNA: 3'- gAUG--UCGuguUGGGCUGGGCGUUCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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