Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23354 | 5' | -54.5 | NC_005259.1 | + | 44733 | 0.68 | 0.690542 |
Target: 5'- -gGCAGCGCGcCCuCGACCgCGcCGAGGc -3' miRNA: 3'- gaUGUCGUGUuGG-GCUGG-GC-GUUCUa -5' |
|||||||
23354 | 5' | -54.5 | NC_005259.1 | + | 56265 | 0.72 | 0.415955 |
Target: 5'- cCUugAGCGCcgccGCCCGGCCCGUAu--- -3' miRNA: 3'- -GAugUCGUGu---UGGGCUGGGCGUucua -5' |
|||||||
23354 | 5' | -54.5 | NC_005259.1 | + | 57016 | 0.68 | 0.646661 |
Target: 5'- cCU-CAGCGCGGCUCGGCgCGguGGGg -3' miRNA: 3'- -GAuGUCGUGUUGGGCUGgGCguUCUa -5' |
|||||||
23354 | 5' | -54.5 | NC_005259.1 | + | 57702 | 0.66 | 0.804341 |
Target: 5'- uUGCcgGGCuu-GCCCGACUCGCGGGu- -3' miRNA: 3'- gAUG--UCGuguUGGGCUGGGCGUUCua -5' |
|||||||
23354 | 5' | -54.5 | NC_005259.1 | + | 66242 | 0.7 | 0.546988 |
Target: 5'- gUGCAGCcaucgacGCAGCgCGGCCCGCGccGGGc -3' miRNA: 3'- gAUGUCG-------UGUUGgGCUGGGCGU--UCUa -5' |
|||||||
23354 | 5' | -54.5 | NC_005259.1 | + | 66302 | 0.68 | 0.66867 |
Target: 5'- uCUGC-GCGCAugugcuGCCCGcagauguauCCCGCGAGAa -3' miRNA: 3'- -GAUGuCGUGU------UGGGCu--------GGGCGUUCUa -5' |
|||||||
23354 | 5' | -54.5 | NC_005259.1 | + | 66919 | 0.67 | 0.712187 |
Target: 5'- -gGCAGCGCGcgguGCUCGACCggggugaGCGGGAc -3' miRNA: 3'- gaUGUCGUGU----UGGGCUGGg------CGUUCUa -5' |
|||||||
23354 | 5' | -54.5 | NC_005259.1 | + | 67530 | 0.72 | 0.44479 |
Target: 5'- -gGCGGCAaucACCUuGCCCGCGAGAUc -3' miRNA: 3'- gaUGUCGUgu-UGGGcUGGGCGUUCUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home