Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23355 | 5' | -57.6 | NC_005259.1 | + | 903 | 0.67 | 0.580446 |
Target: 5'- aCACCGAgGUGGU-GCCcgGCGaUCACCu -3' miRNA: 3'- -GUGGCUaCACCAgCGG--UGCgAGUGGc -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 1493 | 0.66 | 0.643943 |
Target: 5'- uGCgUGAggcaGUGuUCGCCACGCUCACg- -3' miRNA: 3'- gUG-GCUa---CACcAGCGGUGCGAGUGgc -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 1828 | 0.66 | 0.654543 |
Target: 5'- cCGCCGAccUGcUCGCCGCuGC-CGCCGa -3' miRNA: 3'- -GUGGCUacACcAGCGGUG-CGaGUGGC- -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 2736 | 0.68 | 0.549125 |
Target: 5'- cCACCGAUGccgaGGUCGCCGuCGUgcaguacgacCACCu -3' miRNA: 3'- -GUGGCUACa---CCAGCGGU-GCGa---------GUGGc -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 3174 | 0.66 | 0.665122 |
Target: 5'- cCGgCGAUGUcaaGGUCGUCgguGCGCgCACCa -3' miRNA: 3'- -GUgGCUACA---CCAGCGG---UGCGaGUGGc -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 3270 | 0.66 | 0.653483 |
Target: 5'- uGCuCGG-GUGGuuucccgUCGCCGC-CUCGCCGg -3' miRNA: 3'- gUG-GCUaCACC-------AGCGGUGcGAGUGGC- -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 4510 | 0.69 | 0.459059 |
Target: 5'- gCGCCGGgaGUGG-CGCUGCGCggCACCc -3' miRNA: 3'- -GUGGCUa-CACCaGCGGUGCGa-GUGGc -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 6432 | 0.72 | 0.313602 |
Target: 5'- uCGCCGAUGUcGGcacCGUCGCGCUgAUCGg -3' miRNA: 3'- -GUGGCUACA-CCa--GCGGUGCGAgUGGC- -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 8820 | 0.69 | 0.488282 |
Target: 5'- gCGCCGGgccgGUGaGUUGaCGCGCUgCGCCGa -3' miRNA: 3'- -GUGGCUa---CAC-CAGCgGUGCGA-GUGGC- -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 9686 | 0.7 | 0.421601 |
Target: 5'- uGCCGGUcGaGGUCGCC--GCUCACUGg -3' miRNA: 3'- gUGGCUA-CaCCAGCGGugCGAGUGGC- -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 14174 | 0.67 | 0.633335 |
Target: 5'- uCGCCGGgcgGGUgGCaacCGCUCACCc -3' miRNA: 3'- -GUGGCUacaCCAgCGgu-GCGAGUGGc -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 14297 | 0.69 | 0.47844 |
Target: 5'- cCACCGAUGUcGGUgcguauggcCGCCcucgACGC-CGCCGc -3' miRNA: 3'- -GUGGCUACA-CCA---------GCGG----UGCGaGUGGC- -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 15837 | 0.68 | 0.549125 |
Target: 5'- aGCuCGAUGUacGGcucgggcaUCGCCAaGCUCGCCGc -3' miRNA: 3'- gUG-GCUACA--CC--------AGCGGUgCGAGUGGC- -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 16673 | 0.67 | 0.601537 |
Target: 5'- cCGCCucGAUGUGGUCGgcgauCCugGg-CACCGa -3' miRNA: 3'- -GUGG--CUACACCAGC-----GGugCgaGUGGC- -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 16712 | 0.68 | 0.537768 |
Target: 5'- cCGCCGAgcaGGucgcgcucugccUCGCCACGCUCAagaucgcCCGg -3' miRNA: 3'- -GUGGCUacaCC------------AGCGGUGCGAGU-------GGC- -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 19061 | 0.7 | 0.409828 |
Target: 5'- cCACCGAUGUcGGUgucgcgguccggCGCUACGacaagcugcgcgaaCUCACCGg -3' miRNA: 3'- -GUGGCUACA-CCA------------GCGGUGC--------------GAGUGGC- -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 19330 | 0.66 | 0.675673 |
Target: 5'- gCGCUGAUGaUGGUCaGCUACGaggacgaggaCGCCGg -3' miRNA: 3'- -GUGGCUAC-ACCAG-CGGUGCga--------GUGGC- -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 19852 | 0.75 | 0.205826 |
Target: 5'- gCGCuCGGUGUGG-CGCuCGCGCcCGCCGg -3' miRNA: 3'- -GUG-GCUACACCaGCG-GUGCGaGUGGC- -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 20155 | 0.67 | 0.590975 |
Target: 5'- aGCCGGUGcccUGGcCaCCGCGCcCGCCGc -3' miRNA: 3'- gUGGCUAC---ACCaGcGGUGCGaGUGGC- -5' |
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23355 | 5' | -57.6 | NC_005259.1 | + | 20675 | 0.74 | 0.258261 |
Target: 5'- aCGCCauGAUGUGGUCGCacggcaCGCGCUCGgUGg -3' miRNA: 3'- -GUGG--CUACACCAGCG------GUGCGAGUgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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