miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23355 5' -57.6 NC_005259.1 + 903 0.67 0.580446
Target:  5'- aCACCGAgGUGGU-GCCcgGCGaUCACCu -3'
miRNA:   3'- -GUGGCUaCACCAgCGG--UGCgAGUGGc -5'
23355 5' -57.6 NC_005259.1 + 1493 0.66 0.643943
Target:  5'- uGCgUGAggcaGUGuUCGCCACGCUCACg- -3'
miRNA:   3'- gUG-GCUa---CACcAGCGGUGCGAGUGgc -5'
23355 5' -57.6 NC_005259.1 + 1828 0.66 0.654543
Target:  5'- cCGCCGAccUGcUCGCCGCuGC-CGCCGa -3'
miRNA:   3'- -GUGGCUacACcAGCGGUG-CGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 2736 0.68 0.549125
Target:  5'- cCACCGAUGccgaGGUCGCCGuCGUgcaguacgacCACCu -3'
miRNA:   3'- -GUGGCUACa---CCAGCGGU-GCGa---------GUGGc -5'
23355 5' -57.6 NC_005259.1 + 3174 0.66 0.665122
Target:  5'- cCGgCGAUGUcaaGGUCGUCgguGCGCgCACCa -3'
miRNA:   3'- -GUgGCUACA---CCAGCGG---UGCGaGUGGc -5'
23355 5' -57.6 NC_005259.1 + 3270 0.66 0.653483
Target:  5'- uGCuCGG-GUGGuuucccgUCGCCGC-CUCGCCGg -3'
miRNA:   3'- gUG-GCUaCACC-------AGCGGUGcGAGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 4510 0.69 0.459059
Target:  5'- gCGCCGGgaGUGG-CGCUGCGCggCACCc -3'
miRNA:   3'- -GUGGCUa-CACCaGCGGUGCGa-GUGGc -5'
23355 5' -57.6 NC_005259.1 + 6432 0.72 0.313602
Target:  5'- uCGCCGAUGUcGGcacCGUCGCGCUgAUCGg -3'
miRNA:   3'- -GUGGCUACA-CCa--GCGGUGCGAgUGGC- -5'
23355 5' -57.6 NC_005259.1 + 8820 0.69 0.488282
Target:  5'- gCGCCGGgccgGUGaGUUGaCGCGCUgCGCCGa -3'
miRNA:   3'- -GUGGCUa---CAC-CAGCgGUGCGA-GUGGC- -5'
23355 5' -57.6 NC_005259.1 + 9686 0.7 0.421601
Target:  5'- uGCCGGUcGaGGUCGCC--GCUCACUGg -3'
miRNA:   3'- gUGGCUA-CaCCAGCGGugCGAGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 14174 0.67 0.633335
Target:  5'- uCGCCGGgcgGGUgGCaacCGCUCACCc -3'
miRNA:   3'- -GUGGCUacaCCAgCGgu-GCGAGUGGc -5'
23355 5' -57.6 NC_005259.1 + 14297 0.69 0.47844
Target:  5'- cCACCGAUGUcGGUgcguauggcCGCCcucgACGC-CGCCGc -3'
miRNA:   3'- -GUGGCUACA-CCA---------GCGG----UGCGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 15837 0.68 0.549125
Target:  5'- aGCuCGAUGUacGGcucgggcaUCGCCAaGCUCGCCGc -3'
miRNA:   3'- gUG-GCUACA--CC--------AGCGGUgCGAGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 16673 0.67 0.601537
Target:  5'- cCGCCucGAUGUGGUCGgcgauCCugGg-CACCGa -3'
miRNA:   3'- -GUGG--CUACACCAGC-----GGugCgaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 16712 0.68 0.537768
Target:  5'- cCGCCGAgcaGGucgcgcucugccUCGCCACGCUCAagaucgcCCGg -3'
miRNA:   3'- -GUGGCUacaCC------------AGCGGUGCGAGU-------GGC- -5'
23355 5' -57.6 NC_005259.1 + 19061 0.7 0.409828
Target:  5'- cCACCGAUGUcGGUgucgcgguccggCGCUACGacaagcugcgcgaaCUCACCGg -3'
miRNA:   3'- -GUGGCUACA-CCA------------GCGGUGC--------------GAGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 19330 0.66 0.675673
Target:  5'- gCGCUGAUGaUGGUCaGCUACGaggacgaggaCGCCGg -3'
miRNA:   3'- -GUGGCUAC-ACCAG-CGGUGCga--------GUGGC- -5'
23355 5' -57.6 NC_005259.1 + 19852 0.75 0.205826
Target:  5'- gCGCuCGGUGUGG-CGCuCGCGCcCGCCGg -3'
miRNA:   3'- -GUG-GCUACACCaGCG-GUGCGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 20155 0.67 0.590975
Target:  5'- aGCCGGUGcccUGGcCaCCGCGCcCGCCGc -3'
miRNA:   3'- gUGGCUAC---ACCaGcGGUGCGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 20675 0.74 0.258261
Target:  5'- aCGCCauGAUGUGGUCGCacggcaCGCGCUCGgUGg -3'
miRNA:   3'- -GUGG--CUACACCAGCG------GUGCGAGUgGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.