miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23355 5' -57.6 NC_005259.1 + 28005 0.66 0.686185
Target:  5'- uGCCGggGcggGGUCGCCgggguugcgcGCGUUgGCCa -3'
miRNA:   3'- gUGGCuaCa--CCAGCGG----------UGCGAgUGGc -5'
23355 5' -57.6 NC_005259.1 + 22578 0.7 0.443859
Target:  5'- cCACCGAguacGUGGUCGacgcgaucaagcugCACGC-CGCCGa -3'
miRNA:   3'- -GUGGCUa---CACCAGCg-------------GUGCGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 29926 0.7 0.449526
Target:  5'- cCAUCGAcgcGUGGcCGCCACGCggC-CCGg -3'
miRNA:   3'- -GUGGCUa--CACCaGCGGUGCGa-GuGGC- -5'
23355 5' -57.6 NC_005259.1 + 40455 0.7 0.454279
Target:  5'- uGCCGGUGUGGUUgacguacugccggGCCGCGCgguugacguuggaCACCc -3'
miRNA:   3'- gUGGCUACACCAG-------------CGGUGCGa------------GUGGc -5'
23355 5' -57.6 NC_005259.1 + 4510 0.69 0.459059
Target:  5'- gCGCCGGgaGUGG-CGCUGCGCggCACCc -3'
miRNA:   3'- -GUGGCUa-CACCaGCGGUGCGa-GUGGc -5'
23355 5' -57.6 NC_005259.1 + 63387 0.69 0.462902
Target:  5'- uCGCCGAUGgcccacgccgaccaaUGGUUGCCcuUGCUCauGCCGa -3'
miRNA:   3'- -GUGGCUAC---------------ACCAGCGGu-GCGAG--UGGC- -5'
23355 5' -57.6 NC_005259.1 + 14297 0.69 0.47844
Target:  5'- cCACCGAUGUcGGUgcguauggcCGCCcucgACGC-CGCCGc -3'
miRNA:   3'- -GUGGCUACA-CCA---------GCGG----UGCGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 40634 0.69 0.47844
Target:  5'- aACuCGAUGccGUCGCCgagaaagucAUGCUCGCCGa -3'
miRNA:   3'- gUG-GCUACacCAGCGG---------UGCGAGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 8820 0.69 0.488282
Target:  5'- gCGCCGGgccgGUGaGUUGaCGCGCUgCGCCGa -3'
miRNA:   3'- -GUGGCUa---CAC-CAGCgGUGCGA-GUGGC- -5'
23355 5' -57.6 NC_005259.1 + 26461 0.7 0.434503
Target:  5'- gGCCGAUGUGGaacgagcacacguagUUGUCGCggaacgccgcgaGCUCGCCGc -3'
miRNA:   3'- gUGGCUACACC---------------AGCGGUG------------CGAGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 9686 0.7 0.421601
Target:  5'- uGCCGGUcGaGGUCGCC--GCUCACUGg -3'
miRNA:   3'- gUGGCUA-CaCCAGCGGugCGAGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 19061 0.7 0.409828
Target:  5'- cCACCGAUGUcGGUgucgcgguccggCGCUACGacaagcugcgcgaaCUCACCGg -3'
miRNA:   3'- -GUGGCUACA-CCA------------GCGGUGC--------------GAGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 19852 0.75 0.205826
Target:  5'- gCGCuCGGUGUGG-CGCuCGCGCcCGCCGg -3'
miRNA:   3'- -GUG-GCUACACCaGCG-GUGCGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 20675 0.74 0.258261
Target:  5'- aCGCCauGAUGUGGUCGCacggcaCGCGCUCGgUGg -3'
miRNA:   3'- -GUGG--CUACACCAGCG------GUGCGAGUgGC- -5'
23355 5' -57.6 NC_005259.1 + 47943 0.72 0.312858
Target:  5'- aGCCGAUGacggcggugccgaUGGcCGCCGCGC-CGCCc -3'
miRNA:   3'- gUGGCUAC-------------ACCaGCGGUGCGaGUGGc -5'
23355 5' -57.6 NC_005259.1 + 6432 0.72 0.313602
Target:  5'- uCGCCGAUGUcGGcacCGUCGCGCUgAUCGg -3'
miRNA:   3'- -GUGGCUACA-CCa--GCGGUGCGAgUGGC- -5'
23355 5' -57.6 NC_005259.1 + 24743 0.72 0.352525
Target:  5'- --gCGGUGUGGggUGCCgagGCGCUCAUCGa -3'
miRNA:   3'- gugGCUACACCa-GCGG---UGCGAGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 46980 0.72 0.352525
Target:  5'- cCGCCGAUGaucgggccgagGGUgCGCCACGCgaggaaGCCGa -3'
miRNA:   3'- -GUGGCUACa----------CCA-GCGGUGCGag----UGGC- -5'
23355 5' -57.6 NC_005259.1 + 42652 0.71 0.403575
Target:  5'- -cCCGAUGUGGgcgGCCACGCggCugCu -3'
miRNA:   3'- guGGCUACACCag-CGGUGCGa-GugGc -5'
23355 5' -57.6 NC_005259.1 + 50504 0.71 0.403575
Target:  5'- -gUCGAUGUGGgcggugCGCUgcaccucgacGCGCUCGCCu -3'
miRNA:   3'- guGGCUACACCa-----GCGG----------UGCGAGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.