miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23356 5' -57.1 NC_005259.1 + 16789 0.66 0.74834
Target:  5'- uGGgUCGAcgcgguCGCGUacaUCGCGCUCGGgGc -3'
miRNA:   3'- -CCgAGCUu-----GUGCAg--AGCGCGGGCUgC- -5'
23356 5' -57.1 NC_005259.1 + 32923 0.66 0.742362
Target:  5'- cGCUCGGGCGCGgcgguaucgucaccaUCcccugUCGCuGCUCGAUGa -3'
miRNA:   3'- cCGAGCUUGUGC---------------AG-----AGCG-CGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 9865 0.66 0.742362
Target:  5'- cGCggGAACGCGacgauguugucgcuuUcCUCGCGCgCGACGa -3'
miRNA:   3'- cCGagCUUGUGC---------------A-GAGCGCGgGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 45540 0.66 0.738356
Target:  5'- uGGCUgCGAGCGgGUugCUCGCcgggccacccuuGCCCG-CGa -3'
miRNA:   3'- -CCGA-GCUUGUgCA--GAGCG------------CGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 8791 0.66 0.737352
Target:  5'- aGCUCGGcccGCuugGCGaggaucuUCUCGCGCCgGGCc -3'
miRNA:   3'- cCGAGCU---UG---UGC-------AGAGCGCGGgCUGc -5'
23356 5' -57.1 NC_005259.1 + 13459 0.66 0.728274
Target:  5'- cGGCgCGGcGCugGUgCUcaccgCGCuGCCCGACGa -3'
miRNA:   3'- -CCGaGCU-UGugCA-GA-----GCG-CGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 8176 0.66 0.728274
Target:  5'- aGGCUaccccCGuggccuGC-CGUUUaCGCGCCCGAUGu -3'
miRNA:   3'- -CCGA-----GCu-----UGuGCAGA-GCGCGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 13146 0.66 0.728274
Target:  5'- cGGCUCGAuCAUGgccaccaUCcCGCCCGAg- -3'
miRNA:   3'- -CCGAGCUuGUGCag-----AGcGCGGGCUgc -5'
23356 5' -57.1 NC_005259.1 + 36722 0.66 0.718105
Target:  5'- cGCUCGAcC-CG-C-CGCGCCCGcCGg -3'
miRNA:   3'- cCGAGCUuGuGCaGaGCGCGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 43433 0.66 0.707858
Target:  5'- cGCUCG-ACugG-CU-GCGCUCGAUGa -3'
miRNA:   3'- cCGAGCuUGugCaGAgCGCGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 28715 0.66 0.701676
Target:  5'- aGCgCGAACAucgacCGUCUcaaggccgaggguuaCGCGCCCGAgCGu -3'
miRNA:   3'- cCGaGCUUGU-----GCAGA---------------GCGCGGGCU-GC- -5'
23356 5' -57.1 NC_005259.1 + 54132 0.66 0.697543
Target:  5'- cGCUCGugaccaGACG-GUUUCGagGCCCGGCGa -3'
miRNA:   3'- cCGAGC------UUGUgCAGAGCg-CGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 51665 0.66 0.697543
Target:  5'- cGCgCGGGCGCGUCgggcacggGCGCgCGAUGg -3'
miRNA:   3'- cCGaGCUUGUGCAGag------CGCGgGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 52333 0.66 0.697543
Target:  5'- uGGCUCGGACACGcCggUGUGCCg---- -3'
miRNA:   3'- -CCGAGCUUGUGCaGa-GCGCGGgcugc -5'
23356 5' -57.1 NC_005259.1 + 47259 0.66 0.697543
Target:  5'- cGCUCGGugACGCGUUccaGCGCaCCGAg- -3'
miRNA:   3'- cCGAGCU--UGUGCAGag-CGCG-GGCUgc -5'
23356 5' -57.1 NC_005259.1 + 18267 0.66 0.697543
Target:  5'- cGCcUGAACcugagACGacCUCGaCGCCCGACGa -3'
miRNA:   3'- cCGaGCUUG-----UGCa-GAGC-GCGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 29056 0.67 0.68717
Target:  5'- aGCcgCGAGCGCGguaUCG-GCCCGAUc -3'
miRNA:   3'- cCGa-GCUUGUGCag-AGCgCGGGCUGc -5'
23356 5' -57.1 NC_005259.1 + 67441 0.67 0.68717
Target:  5'- cGCUUGAGCGCGUCgggGaUGCCCuuuucGGCGa -3'
miRNA:   3'- cCGAGCUUGUGCAGag-C-GCGGG-----CUGC- -5'
23356 5' -57.1 NC_005259.1 + 16933 0.67 0.676749
Target:  5'- gGGCUCGAAaugacccgcUACG-CUCGCcauUCCGACa -3'
miRNA:   3'- -CCGAGCUU---------GUGCaGAGCGc--GGGCUGc -5'
23356 5' -57.1 NC_005259.1 + 26653 0.67 0.676749
Target:  5'- cGCUCG-GCAgGUUcggCGCaCCCGGCGg -3'
miRNA:   3'- cCGAGCuUGUgCAGa--GCGcGGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.