miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23356 5' -57.1 NC_005259.1 + 19853 0.77 0.203549
Target:  5'- cGCUCGguGugGCG-CUCGCGCCCGcCGg -3'
miRNA:   3'- cCGAGC--UugUGCaGAGCGCGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 17100 0.74 0.274426
Target:  5'- gGGCugUCGAuCAUGUUcaUCGCGCCCGAUu -3'
miRNA:   3'- -CCG--AGCUuGUGCAG--AGCGCGGGCUGc -5'
23356 5' -57.1 NC_005259.1 + 11923 0.74 0.299951
Target:  5'- aGCUCGAACAccgccgccuuuuccCGUUcgCGCaGCCCGGCGa -3'
miRNA:   3'- cCGAGCUUGU--------------GCAGa-GCG-CGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 38920 0.73 0.331874
Target:  5'- cGCUUGAGCACGUCgguguugcUGUGCCCGGu- -3'
miRNA:   3'- cCGAGCUUGUGCAGa-------GCGCGGGCUgc -5'
23356 5' -57.1 NC_005259.1 + 9133 0.72 0.380464
Target:  5'- cGGUaCGGGCAgcCGUgCUCGUGCCCGuCGa -3'
miRNA:   3'- -CCGaGCUUGU--GCA-GAGCGCGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 58353 0.71 0.432665
Target:  5'- uGGcCUCGGGCACGUCgcagaagUCGUagagcuGCuCCGACGg -3'
miRNA:   3'- -CC-GAGCUUGUGCAG-------AGCG------CG-GGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 44398 0.71 0.452228
Target:  5'- cGC-CGAGCACGUCggugCcCGCCUGACc -3'
miRNA:   3'- cCGaGCUUGUGCAGa---GcGCGGGCUGc -5'
23356 5' -57.1 NC_005259.1 + 64263 0.7 0.4713
Target:  5'- uGGUgcgCGAGCACGaguUCgCGCGCCacgaGACGu -3'
miRNA:   3'- -CCGa--GCUUGUGC---AGaGCGCGGg---CUGC- -5'
23356 5' -57.1 NC_005259.1 + 37501 0.7 0.480987
Target:  5'- cGGCggUGAGCACGa--UGCuGCCCGACGa -3'
miRNA:   3'- -CCGa-GCUUGUGCagaGCG-CGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 51262 0.7 0.486846
Target:  5'- cGGCUCGcgguggucacgguGCGCGgcaagCggcaGCGCCCGACa -3'
miRNA:   3'- -CCGAGCu------------UGUGCa----Gag--CGCGGGCUGc -5'
23356 5' -57.1 NC_005259.1 + 40334 0.7 0.490771
Target:  5'- aGCUgcCGGACAC--CUCGCGCCuCGAUGa -3'
miRNA:   3'- cCGA--GCUUGUGcaGAGCGCGG-GCUGC- -5'
23356 5' -57.1 NC_005259.1 + 55595 0.7 0.500646
Target:  5'- uGGCcacgCGAuacCACGUCUCGCGCgCCuuGGCc -3'
miRNA:   3'- -CCGa---GCUu--GUGCAGAGCGCG-GG--CUGc -5'
23356 5' -57.1 NC_005259.1 + 65099 0.7 0.500646
Target:  5'- cGGCUCGuGGCACgGUCagugcgucaccgUCgGCGCaCCGGCGg -3'
miRNA:   3'- -CCGAGC-UUGUG-CAG------------AG-CGCG-GGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 18696 0.69 0.53077
Target:  5'- uGCUUGAGCACGgcggucugacCUCGaucaucgggcCGCCCGGCa -3'
miRNA:   3'- cCGAGCUUGUGCa---------GAGC----------GCGGGCUGc -5'
23356 5' -57.1 NC_005259.1 + 60934 0.69 0.53077
Target:  5'- cGGcCUUGGugAuCGUCUgcaccacaugCGCGUCCGGCGg -3'
miRNA:   3'- -CC-GAGCUugU-GCAGA----------GCGCGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 63359 0.69 0.53077
Target:  5'- gGGCUUGAugugaagcuGCACGUcCUCGuCG-CCGAUGg -3'
miRNA:   3'- -CCGAGCU---------UGUGCA-GAGC-GCgGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 60971 0.69 0.561529
Target:  5'- nGGCagaUCGAACcauuccucuuCGgugagCUCGCGCCCGuCGa -3'
miRNA:   3'- -CCG---AGCUUGu---------GCa----GAGCGCGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 26491 0.69 0.561529
Target:  5'- cGCg-GAACGCcgcgagCUCGcCGCCCGGCGa -3'
miRNA:   3'- cCGagCUUGUGca----GAGC-GCGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 57166 0.69 0.571894
Target:  5'- uGC-CGAACGCGUcCUCGCcgccguaguucgGCCCG-CGa -3'
miRNA:   3'- cCGaGCUUGUGCA-GAGCG------------CGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 52206 0.68 0.582304
Target:  5'- cGGCUCauGGGCaccGCGUUcCGCGCCCGcUGa -3'
miRNA:   3'- -CCGAG--CUUG---UGCAGaGCGCGGGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.