miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23356 5' -57.1 NC_005259.1 + 11240 0.68 0.603231
Target:  5'- gGGCUCGGGCA--UCgCGCGCaccaCGugGg -3'
miRNA:   3'- -CCGAGCUUGUgcAGaGCGCGg---GCugC- -5'
23356 5' -57.1 NC_005259.1 + 54355 0.68 0.613732
Target:  5'- aGGgUCGGGCaACGgauugcgCUCGCGaucaCCGAUGa -3'
miRNA:   3'- -CCgAGCUUG-UGCa------GAGCGCg---GGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 16520 0.68 0.613732
Target:  5'- aGGCgcugCGAGCGuCG-CUCaaggguGCGCCCGAgCGa -3'
miRNA:   3'- -CCGa---GCUUGU-GCaGAG------CGCGGGCU-GC- -5'
23356 5' -57.1 NC_005259.1 + 57612 0.68 0.617938
Target:  5'- aGCUCGAugACGUugCUCaucgagcggaaccauGUGCCCGcCGg -3'
miRNA:   3'- cCGAGCUugUGCA--GAG---------------CGCGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 4683 0.68 0.624248
Target:  5'- uGGCUCGGGC-CGacagCUCG-GCcCCGugGu -3'
miRNA:   3'- -CCGAGCUUGuGCa---GAGCgCG-GGCugC- -5'
23356 5' -57.1 NC_005259.1 + 20465 0.68 0.624248
Target:  5'- uGGCUCGGAUGaccgcCGUCgaccUCGacacCGCCCGGCa -3'
miRNA:   3'- -CCGAGCUUGU-----GCAG----AGC----GCGGGCUGc -5'
23356 5' -57.1 NC_005259.1 + 17538 0.67 0.633718
Target:  5'- aGCgacggCGGGCAUuUCUacuucacCGUGCCCGACGa -3'
miRNA:   3'- cCGa----GCUUGUGcAGA-------GCGCGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 23689 0.67 0.634771
Target:  5'- aGGCgcacgcaGAcuacCGCGUCgugaUCGCGCCgGACGg -3'
miRNA:   3'- -CCGag-----CUu---GUGCAG----AGCGCGGgCUGC- -5'
23356 5' -57.1 NC_005259.1 + 42746 0.67 0.634771
Target:  5'- uGCUUGAGCAgGcgguUCUCGaucuGCUCGGCGg -3'
miRNA:   3'- cCGAGCUUGUgC----AGAGCg---CGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 58861 0.67 0.645291
Target:  5'- gGGCUCGccguCGUCgUCGuCGCCuCGGCa -3'
miRNA:   3'- -CCGAGCuuguGCAG-AGC-GCGG-GCUGc -5'
23356 5' -57.1 NC_005259.1 + 46874 0.67 0.645291
Target:  5'- aGGCUUGAAuCGCG-C-CGcCGCCCG-CGa -3'
miRNA:   3'- -CCGAGCUU-GUGCaGaGC-GCGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 61733 0.67 0.645291
Target:  5'- --gUCGAGCAgGUg-UGCGUCCGGCGa -3'
miRNA:   3'- ccgAGCUUGUgCAgaGCGCGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 68703 0.67 0.6558
Target:  5'- aGGCggGcAGCGCGUCg-GUGCCCGAg- -3'
miRNA:   3'- -CCGagC-UUGUGCAGagCGCGGGCUgc -5'
23356 5' -57.1 NC_005259.1 + 50429 0.67 0.666289
Target:  5'- cGGCUCGGGCAgCGgugCGgGCUCGGgGu -3'
miRNA:   3'- -CCGAGCUUGU-GCagaGCgCGGGCUgC- -5'
23356 5' -57.1 NC_005259.1 + 16933 0.67 0.676749
Target:  5'- gGGCUCGAAaugacccgcUACG-CUCGCcauUCCGACa -3'
miRNA:   3'- -CCGAGCUU---------GUGCaGAGCGc--GGGCUGc -5'
23356 5' -57.1 NC_005259.1 + 26653 0.67 0.676749
Target:  5'- cGCUCG-GCAgGUUcggCGCaCCCGGCGg -3'
miRNA:   3'- cCGAGCuUGUgCAGa--GCGcGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 67441 0.67 0.68717
Target:  5'- cGCUUGAGCGCGUCgggGaUGCCCuuuucGGCGa -3'
miRNA:   3'- cCGAGCUUGUGCAGag-C-GCGGG-----CUGC- -5'
23356 5' -57.1 NC_005259.1 + 29056 0.67 0.68717
Target:  5'- aGCcgCGAGCGCGguaUCG-GCCCGAUc -3'
miRNA:   3'- cCGa-GCUUGUGCag-AGCgCGGGCUGc -5'
23356 5' -57.1 NC_005259.1 + 51665 0.66 0.697543
Target:  5'- cGCgCGGGCGCGUCgggcacggGCGCgCGAUGg -3'
miRNA:   3'- cCGaGCUUGUGCAGag------CGCGgGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 54132 0.66 0.697543
Target:  5'- cGCUCGugaccaGACG-GUUUCGagGCCCGGCGa -3'
miRNA:   3'- cCGAGC------UUGUgCAGAGCg-CGGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.