miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23356 5' -57.1 NC_005259.1 + 26653 0.67 0.676749
Target:  5'- cGCUCG-GCAgGUUcggCGCaCCCGGCGg -3'
miRNA:   3'- cCGAGCuUGUgCAGa--GCGcGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 28715 0.66 0.701676
Target:  5'- aGCgCGAACAucgacCGUCUcaaggccgaggguuaCGCGCCCGAgCGu -3'
miRNA:   3'- cCGaGCUUGU-----GCAGA---------------GCGCGGGCU-GC- -5'
23356 5' -57.1 NC_005259.1 + 29056 0.67 0.68717
Target:  5'- aGCcgCGAGCGCGguaUCG-GCCCGAUc -3'
miRNA:   3'- cCGa-GCUUGUGCag-AGCgCGGGCUGc -5'
23356 5' -57.1 NC_005259.1 + 32923 0.66 0.742362
Target:  5'- cGCUCGGGCGCGgcgguaucgucaccaUCcccugUCGCuGCUCGAUGa -3'
miRNA:   3'- cCGAGCUUGUGC---------------AG-----AGCG-CGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 36722 0.66 0.718105
Target:  5'- cGCUCGAcC-CG-C-CGCGCCCGcCGg -3'
miRNA:   3'- cCGAGCUuGuGCaGaGCGCGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 37501 0.7 0.480987
Target:  5'- cGGCggUGAGCACGa--UGCuGCCCGACGa -3'
miRNA:   3'- -CCGa-GCUUGUGCagaGCG-CGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 38920 0.73 0.331874
Target:  5'- cGCUUGAGCACGUCgguguugcUGUGCCCGGu- -3'
miRNA:   3'- cCGAGCUUGUGCAGa-------GCGCGGGCUgc -5'
23356 5' -57.1 NC_005259.1 + 40334 0.7 0.490771
Target:  5'- aGCUgcCGGACAC--CUCGCGCCuCGAUGa -3'
miRNA:   3'- cCGA--GCUUGUGcaGAGCGCGG-GCUGC- -5'
23356 5' -57.1 NC_005259.1 + 42746 0.67 0.634771
Target:  5'- uGCUUGAGCAgGcgguUCUCGaucuGCUCGGCGg -3'
miRNA:   3'- cCGAGCUUGUgC----AGAGCg---CGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 43433 0.66 0.707858
Target:  5'- cGCUCG-ACugG-CU-GCGCUCGAUGa -3'
miRNA:   3'- cCGAGCuUGugCaGAgCGCGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 44398 0.71 0.452228
Target:  5'- cGC-CGAGCACGUCggugCcCGCCUGACc -3'
miRNA:   3'- cCGaGCUUGUGCAGa---GcGCGGGCUGc -5'
23356 5' -57.1 NC_005259.1 + 45540 0.66 0.738356
Target:  5'- uGGCUgCGAGCGgGUugCUCGCcgggccacccuuGCCCG-CGa -3'
miRNA:   3'- -CCGA-GCUUGUgCA--GAGCG------------CGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 46874 0.67 0.645291
Target:  5'- aGGCUUGAAuCGCG-C-CGcCGCCCG-CGa -3'
miRNA:   3'- -CCGAGCUU-GUGCaGaGC-GCGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 47259 0.66 0.697543
Target:  5'- cGCUCGGugACGCGUUccaGCGCaCCGAg- -3'
miRNA:   3'- cCGAGCU--UGUGCAGag-CGCG-GGCUgc -5'
23356 5' -57.1 NC_005259.1 + 50429 0.67 0.666289
Target:  5'- cGGCUCGGGCAgCGgugCGgGCUCGGgGu -3'
miRNA:   3'- -CCGAGCUUGU-GCagaGCgCGGGCUgC- -5'
23356 5' -57.1 NC_005259.1 + 51262 0.7 0.486846
Target:  5'- cGGCUCGcgguggucacgguGCGCGgcaagCggcaGCGCCCGACa -3'
miRNA:   3'- -CCGAGCu------------UGUGCa----Gag--CGCGGGCUGc -5'
23356 5' -57.1 NC_005259.1 + 51665 0.66 0.697543
Target:  5'- cGCgCGGGCGCGUCgggcacggGCGCgCGAUGg -3'
miRNA:   3'- cCGaGCUUGUGCAGag------CGCGgGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 52206 0.68 0.582304
Target:  5'- cGGCUCauGGGCaccGCGUUcCGCGCCCGcUGa -3'
miRNA:   3'- -CCGAG--CUUG---UGCAGaGCGCGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 52333 0.66 0.697543
Target:  5'- uGGCUCGGACACGcCggUGUGCCg---- -3'
miRNA:   3'- -CCGAGCUUGUGCaGa-GCGCGGgcugc -5'
23356 5' -57.1 NC_005259.1 + 54132 0.66 0.697543
Target:  5'- cGCUCGugaccaGACG-GUUUCGagGCCCGGCGa -3'
miRNA:   3'- cCGAGC------UUGUgCAGAGCg-CGGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.