miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23356 5' -57.1 NC_005259.1 + 68703 0.67 0.6558
Target:  5'- aGGCggGcAGCGCGUCg-GUGCCCGAg- -3'
miRNA:   3'- -CCGagC-UUGUGCAGagCGCGGGCUgc -5'
23356 5' -57.1 NC_005259.1 + 67441 0.67 0.68717
Target:  5'- cGCUUGAGCGCGUCgggGaUGCCCuuuucGGCGa -3'
miRNA:   3'- cCGAGCUUGUGCAGag-C-GCGGG-----CUGC- -5'
23356 5' -57.1 NC_005259.1 + 65099 0.7 0.500646
Target:  5'- cGGCUCGuGGCACgGUCagugcgucaccgUCgGCGCaCCGGCGg -3'
miRNA:   3'- -CCGAGC-UUGUG-CAG------------AG-CGCG-GGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 64263 0.7 0.4713
Target:  5'- uGGUgcgCGAGCACGaguUCgCGCGCCacgaGACGu -3'
miRNA:   3'- -CCGa--GCUUGUGC---AGaGCGCGGg---CUGC- -5'
23356 5' -57.1 NC_005259.1 + 63359 0.69 0.53077
Target:  5'- gGGCUUGAugugaagcuGCACGUcCUCGuCG-CCGAUGg -3'
miRNA:   3'- -CCGAGCU---------UGUGCA-GAGC-GCgGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 61733 0.67 0.645291
Target:  5'- --gUCGAGCAgGUg-UGCGUCCGGCGa -3'
miRNA:   3'- ccgAGCUUGUgCAgaGCGCGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 60971 0.69 0.561529
Target:  5'- nGGCagaUCGAACcauuccucuuCGgugagCUCGCGCCCGuCGa -3'
miRNA:   3'- -CCG---AGCUUGu---------GCa----GAGCGCGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 60934 0.69 0.53077
Target:  5'- cGGcCUUGGugAuCGUCUgcaccacaugCGCGUCCGGCGg -3'
miRNA:   3'- -CC-GAGCUugU-GCAGA----------GCGCGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 58861 0.67 0.645291
Target:  5'- gGGCUCGccguCGUCgUCGuCGCCuCGGCa -3'
miRNA:   3'- -CCGAGCuuguGCAG-AGC-GCGG-GCUGc -5'
23356 5' -57.1 NC_005259.1 + 58353 0.71 0.432665
Target:  5'- uGGcCUCGGGCACGUCgcagaagUCGUagagcuGCuCCGACGg -3'
miRNA:   3'- -CC-GAGCUUGUGCAG-------AGCG------CG-GGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 57612 0.68 0.617938
Target:  5'- aGCUCGAugACGUugCUCaucgagcggaaccauGUGCCCGcCGg -3'
miRNA:   3'- cCGAGCUugUGCA--GAG---------------CGCGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 57166 0.69 0.571894
Target:  5'- uGC-CGAACGCGUcCUCGCcgccguaguucgGCCCG-CGa -3'
miRNA:   3'- cCGaGCUUGUGCA-GAGCG------------CGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 55595 0.7 0.500646
Target:  5'- uGGCcacgCGAuacCACGUCUCGCGCgCCuuGGCc -3'
miRNA:   3'- -CCGa---GCUu--GUGCAGAGCGCG-GG--CUGc -5'
23356 5' -57.1 NC_005259.1 + 54355 0.68 0.613732
Target:  5'- aGGgUCGGGCaACGgauugcgCUCGCGaucaCCGAUGa -3'
miRNA:   3'- -CCgAGCUUG-UGCa------GAGCGCg---GGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 54132 0.66 0.697543
Target:  5'- cGCUCGugaccaGACG-GUUUCGagGCCCGGCGa -3'
miRNA:   3'- cCGAGC------UUGUgCAGAGCg-CGGGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 52333 0.66 0.697543
Target:  5'- uGGCUCGGACACGcCggUGUGCCg---- -3'
miRNA:   3'- -CCGAGCUUGUGCaGa-GCGCGGgcugc -5'
23356 5' -57.1 NC_005259.1 + 52206 0.68 0.582304
Target:  5'- cGGCUCauGGGCaccGCGUUcCGCGCCCGcUGa -3'
miRNA:   3'- -CCGAG--CUUG---UGCAGaGCGCGGGCuGC- -5'
23356 5' -57.1 NC_005259.1 + 51665 0.66 0.697543
Target:  5'- cGCgCGGGCGCGUCgggcacggGCGCgCGAUGg -3'
miRNA:   3'- cCGaGCUUGUGCAGag------CGCGgGCUGC- -5'
23356 5' -57.1 NC_005259.1 + 51262 0.7 0.486846
Target:  5'- cGGCUCGcgguggucacgguGCGCGgcaagCggcaGCGCCCGACa -3'
miRNA:   3'- -CCGAGCu------------UGUGCa----Gag--CGCGGGCUGc -5'
23356 5' -57.1 NC_005259.1 + 50429 0.67 0.666289
Target:  5'- cGGCUCGGGCAgCGgugCGgGCUCGGgGu -3'
miRNA:   3'- -CCGAGCUUGU-GCagaGCgCGGGCUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.