miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23357 3' -58.4 NC_005259.1 + 31936 0.67 0.579452
Target:  5'- cUCGgGGuCGaGGCGGU-UACCUCGGguGCCu -3'
miRNA:   3'- -GGCgUC-GC-CCGUCAuGUGGAGCC--UGG- -5'
23357 3' -58.4 NC_005259.1 + 20333 0.67 0.569082
Target:  5'- aCGUgcacgaccuauGGCGGGCGGUACuacgcguccACCUCGugcGACg -3'
miRNA:   3'- gGCG-----------UCGCCCGUCAUG---------UGGAGC---CUGg -5'
23357 3' -58.4 NC_005259.1 + 27105 0.67 0.558758
Target:  5'- aUGCGGUGGGCuGUGuCAUg-CGGAUCu -3'
miRNA:   3'- gGCGUCGCCCGuCAU-GUGgaGCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 56026 0.67 0.558758
Target:  5'- cUCGC--CGGGCGGgACuuCCUCGGGCg -3'
miRNA:   3'- -GGCGucGCCCGUCaUGu-GGAGCCUGg -5'
23357 3' -58.4 NC_005259.1 + 29119 0.68 0.538278
Target:  5'- cCUGCuggugAGCGcGGCGGUAUucGCCUCGcucACCg -3'
miRNA:   3'- -GGCG-----UCGC-CCGUCAUG--UGGAGCc--UGG- -5'
23357 3' -58.4 NC_005259.1 + 34908 0.68 0.538278
Target:  5'- gCCGCu-CGGGCAucacacUGCuGCCUCGGGCg -3'
miRNA:   3'- -GGCGucGCCCGUc-----AUG-UGGAGCCUGg -5'
23357 3' -58.4 NC_005259.1 + 774 0.68 0.53726
Target:  5'- aCCGCGcCGaGGCGGcUGC-CCUCGGuugggugGCCa -3'
miRNA:   3'- -GGCGUcGC-CCGUC-AUGuGGAGCC-------UGG- -5'
23357 3' -58.4 NC_005259.1 + 47171 0.68 0.528134
Target:  5'- aCCGUAGCGgcgaaggucGGCGGUGC-CgUCGGcgaagaacuuGCCg -3'
miRNA:   3'- -GGCGUCGC---------CCGUCAUGuGgAGCC----------UGG- -5'
23357 3' -58.4 NC_005259.1 + 41880 0.68 0.528134
Target:  5'- aCCGUGGCGGGCcGaUACGCaugCGGGa- -3'
miRNA:   3'- -GGCGUCGCCCGuC-AUGUGga-GCCUgg -5'
23357 3' -58.4 NC_005259.1 + 63653 0.68 0.528134
Target:  5'- cUCGCuGGcCGGGacgcCGG-ACACCUCGGGCa -3'
miRNA:   3'- -GGCG-UC-GCCC----GUCaUGUGGAGCCUGg -5'
23357 3' -58.4 NC_005259.1 + 60165 0.68 0.528134
Target:  5'- -aGCGGCcucacGGGCGGcgaACGCCUgcucgaccgacCGGGCCa -3'
miRNA:   3'- ggCGUCG-----CCCGUCa--UGUGGA-----------GCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 20542 0.68 0.518061
Target:  5'- cCCGCAGCGuGGUGGaucaGCACCgacccCGaGAUCa -3'
miRNA:   3'- -GGCGUCGC-CCGUCa---UGUGGa----GC-CUGG- -5'
23357 3' -58.4 NC_005259.1 + 51541 0.68 0.518061
Target:  5'- aCGgGGcCGGGCaAGUGCACgacgUUgGGGCCa -3'
miRNA:   3'- gGCgUC-GCCCG-UCAUGUG----GAgCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 9700 0.68 0.518061
Target:  5'- gCCGCucacUGGGCAccgu-CCUCGGGCCg -3'
miRNA:   3'- -GGCGuc--GCCCGUcauguGGAGCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 28073 0.68 0.517058
Target:  5'- gCCGCcacacGGUGGG--GUGCACCUCgaagugcagauguGGGCCg -3'
miRNA:   3'- -GGCG-----UCGCCCguCAUGUGGAG-------------CCUGG- -5'
23357 3' -58.4 NC_005259.1 + 27389 0.68 0.498153
Target:  5'- aCCgGCGGCGgugucGGCAGcggcgGCAgCUCGGugCc -3'
miRNA:   3'- -GG-CGUCGC-----CCGUCa----UGUgGAGCCugG- -5'
23357 3' -58.4 NC_005259.1 + 10348 0.68 0.498153
Target:  5'- gCgGCAGCGGGCucgACA--UCGGGCUc -3'
miRNA:   3'- -GgCGUCGCCCGucaUGUggAGCCUGG- -5'
23357 3' -58.4 NC_005259.1 + 62445 0.69 0.488328
Target:  5'- aCGCAGCagugaguguGGGCAGUACAaa--GGGCa -3'
miRNA:   3'- gGCGUCG---------CCCGUCAUGUggagCCUGg -5'
23357 3' -58.4 NC_005259.1 + 63172 0.69 0.46513
Target:  5'- gCCGCAGCGccgccgaGGUGaucgcaccccggucGUGCGCCUC-GACCg -3'
miRNA:   3'- -GGCGUCGC-------CCGU--------------CAUGUGGAGcCUGG- -5'
23357 3' -58.4 NC_005259.1 + 63730 0.69 0.459421
Target:  5'- gCGCAGCcGGUAGcgACAUCUCGG-Cg -3'
miRNA:   3'- gGCGUCGcCCGUCa-UGUGGAGCCuGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.